View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11293A_low_308 (Length: 204)

Name: NF11293A_low_308
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11293A_low_308
NF11293A_low_308
[»] chr6 (11 HSPs)
chr6 (37-190)||(31564964-31565117)
chr6 (14-190)||(33414568-33414744)
chr6 (14-121)||(33269541-33269648)
chr6 (14-190)||(33258194-33258372)
chr6 (25-141)||(33384040-33384156)
chr6 (64-160)||(33278972-33279068)
chr6 (14-190)||(33395052-33395230)
chr6 (67-190)||(33280358-33280481)
chr6 (27-71)||(33293034-33293078)
chr6 (130-190)||(33293090-33293150)
chr6 (58-190)||(33406916-33407048)
[»] chr2 (1 HSPs)
chr2 (14-190)||(17447805-17447981)
[»] scaffold0428 (3 HSPs)
scaffold0428 (14-190)||(2315-2493)
scaffold0428 (64-160)||(15185-15281)
scaffold0428 (67-190)||(13772-13895)


Alignment Details
Target: chr6 (Bit Score: 138; Significance: 2e-72; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 37 - 190
Target Start/End: Complemental strand, 31565117 - 31564964
Alignment:
Q  37 tgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgt 136  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt 31565018  T
Q  137 gaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttatcag 190  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  31565017 gaatgtatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcag 31564964  T

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Target: chr6; HSP #2
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 33414568 - 33414744
Alignment:
Q  14 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaat 113  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || | ||||||||||||||| |||||||||||    
T  33414568 gaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaactccttgaatttctcacttctgccaacaaagtccgtttcacagttcacttcaat 33414667  T
Q  114 tagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttatcag 190  Q
    |||||||| |||  ||| |||||||||||||||| ||||||||||||||||  || |||||||||||||||||||||    
T  33414668 tagaacaccaatacgtgcatcgtgaatgtatgtaccgattcttccttcagctgctagtcttccggatttcttatcag 33414744  T

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Target: chr6; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 33269541 - 33269648
Alignment:
Q  14 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaat 113  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| || | |||||| |||||||| |||||||||||    
T  33269541 gaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaacttcttgaatttctcacttctgccaacaaagtcggtttcacagttcacttcaat 33269640  T
Q  114 tagaacac 121  Q
    ||||||||    
T  33269641 tagaacac 33269648  T

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Target: chr6; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 33258194 - 33258372
Alignment:
Q  14 gaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaa 112  Q
    |||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  ||||||||||    
T  33258194 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 33258293  T
Q  113 ttagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttatcag 190  Q
    ||||||||| ||||||||||||| || || |||||| |||||||||||||  |  || |||| ||||||||||||||||    
T  33258294 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcag 33258372  T

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Target: chr6; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 33384040 - 33384156
Alignment:
Q  25 caagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaa 124  Q
    |||||||| ||||||||||||||||||| ||| |||||||| | |||||||||||| |||| |||||| |||| ||| |||||||||||||||||||  |    
T  33384040 caagcagccacttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccga 33384139  T
Q  125 tgtgtgaatcgtgaatg 141  Q
    ||||||||| |||||||    
T  33384140 tgtgtgaatagtgaatg 33384156  T

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Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 33278972 - 33279068
Alignment:
Q  64 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttcctt 160  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  33278972 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctt 33279068  T

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Target: chr6; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 33395052 - 33395230
Alignment:
Q  14 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttcta--ccgataaagtccgtttcacatttcacttca 111  Q
    |||||||||||||||||||   |||||||| |||||||  ||| |||||||||||| | ||||||||   || | |||||| |||||||| |||||||||    
T  33395052 gaacctgtggacaagcagcctattgcattgaaagatcagcaaccaactccttgaatctatcacttctgtgccaacaaagtcggtttcacagttcacttca 33395151  T
Q  112 attagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttatcag 190  Q
    || ||||||   ||| ||| ||||| ||||||| || ||||||||||||||||  || | || ||||||||||| ||||    
T  33395152 atcagaacatagatgcgtgcatcgtcaatgtatttaccgattcttccttcagctgctagcctaccggatttcttgtcag 33395230  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 67 - 190
Target Start/End: Original strand, 33280358 - 33280481
Alignment:
Q  67 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 166  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  33280358 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 33280457  T
Q  167 ctcgtcttccggatttcttatcag 190  Q
     |  ||||||||||||||| ||||    
T  33280458 ttaatcttccggatttcttgtcag 33280481  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 33293034 - 33293078
Alignment:
Q  27 agcagcaacttgcattgcaagatcatgaacaaactccttgaattt 71  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||    
T  33293034 agcagcaacttgcattgcaagatcattaaccaactccttgaattt 33293078  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 33293090 - 33293150
Alignment:
Q  130 gaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttatcag 190  Q
    |||||||||||||||||| | ||||||||||||||  || |||||| ||||||||||||||    
T  33293090 gaatcgtgaatgtatgtaccaattcttccttcagctgctagtcttctggatttcttatcag 33293150  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 190
Target Start/End: Original strand, 33406916 - 33407048
Alignment:
Q  58 aactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttc 157  Q
    ||||||| ||||| ||||||||| || | |||||| |||||| | |||||| |||||| ||||||||||  | ||| || ||| |||||| || || |||    
T  33406916 aactcctcgaattgctcacttctgccaacaaagtcggtttcatagttcactacaattataacactaatgcataaattgtcaatatatgtaccggtttttc 33407015  T
Q  158 cttcagcaactcgtcttccggatttcttatcag 190  Q
    | || ||  || |||||| ||||||||||||||    
T  33407016 catcggctgctagtcttctggatttcttatcag 33407048  T

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Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 17447981 - 17447805
Alignment:
Q  14 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaat 113  Q
    ||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||| |||| ||||| || | |||||| |||||| | |||| ||||||    
T  17447981 gaacctgtggaaaagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaat 17447882  T
Q  114 tagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttatcag 190  Q
    |||| |||  ||| ||| |||||||||||||||| ||||||||||||||||  |  |||||||||||||||||||||    
T  17447881 tagaccaccgatgcgtgcatcgtgaatgtatgtaccgattcttccttcagctgccagtcttccggatttcttatcag 17447805  T

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Target: scaffold0428 (Bit Score: 71; Significance: 2e-32; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 2315 - 2493
Alignment:
Q  14 gaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaa 112  Q
    |||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  ||||||||||    
T  2315 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 2414  T
Q  113 ttagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttatcag 190  Q
    ||||||||| ||||||||||||| || || |||||| |||||||||||||  |  || |||| ||||||||||||||||    
T  2415 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcag 2493  T

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Target: scaffold0428; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 15281 - 15185
Alignment:
Q  64 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttcctt 160  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  15281 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctt 15185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 67 - 190
Target Start/End: Complemental strand, 13895 - 13772
Alignment:
Q  67 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 166  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  13895 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 13796  T
Q  167 ctcgtcttccggatttcttatcag 190  Q
     |  ||||||||||||||| ||||    
T  13795 ttaatcttccggatttcttgtcag 13772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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