View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_31 (Length: 410)
Name: NF11293A_low_31
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 100 - 391
Target Start/End: Original strand, 37232224 - 37232515
Alignment:
| Q |
100 |
ataaaaatgattgtttctttattaactatcttcagtaactttgttgtttatactatattctctaatgtaatagtaattttgtaacctatatctatctgtt |
199 |
Q |
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| T |
37232224 |
ataaaaatgattgtttctttattaactttcttcagtaactttgttgtttatactatattctctaatgtaatagtaattttgtaacctatatctatctgtt |
37232323 |
T |
|
| Q |
200 |
gttatgtccatataggtaaacttgattggatattgtgttgagggatttctatttctcgtgtatgaatacatggaaaatggaaacttaagccaacatctac |
299 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37232324 |
gttatgtccatataggtacacttgattggatattgtgttgagggatttctatttcttgtgtatgaatacatggaaaatggaaacttaagccaacatctac |
37232423 |
T |
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| Q |
300 |
ataattcaggtgatattattaacacattaaaagcatcaattttcaatgatgtttcattaatttgagtactgtttgcagagaaagaactgatg |
391 |
Q |
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| T |
37232424 |
ataattcaggtgatattattaacacattaaaagtatcaattttcaatgatgtttcattaatttgagtactttttgcagagaaagaactgatg |
37232515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 100 - 320
Target Start/End: Original strand, 37223280 - 37223500
Alignment:
| Q |
100 |
ataaaaatgattgtttctttattaactatcttcagtaactttgttgtttatactatattctctaatgtaatagtaattttgtaacctatatctatctgtt |
199 |
Q |
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|||||| | |||||| ||||||||||| ||||||||||||||| |||||||| |||||||| ||||||| |||||||||||||||||||||||||| || |
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| T |
37223280 |
ataaaagtaattgttgctttattaactttcttcagtaactttgctgtttatattatattctttaatgtatcagtaattttgtaacctatatctatctatt |
37223379 |
T |
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| Q |
200 |
gttatgtccatataggtaaacttgattggatattgtgttgagggatttctatttctcgtgtatgaatacatggaaaatggaaacttaagccaacatctac |
299 |
Q |
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| T |
37223380 |
gttatgttcatataggtacacttgattggatattgtgttgagggatttctattccttgtgtatgaatacatggaaaatggaaacttaaaccaacatctac |
37223479 |
T |
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| Q |
300 |
ataattcaggtgatattatta |
320 |
Q |
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||||||||||||||||||||| |
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| T |
37223480 |
ataattcaggtgatattatta |
37223500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 109 - 320
Target Start/End: Original strand, 37217586 - 37217801
Alignment:
| Q |
109 |
attgtttctttattaactatcttcagtaactttgttgtttatactatattctctaatgtaatagtaattttgtaacctatatctatctgttgttatgtcc |
208 |
Q |
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|||||| | ||||||||| ||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| ||| ||||||||| |
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| T |
37217586 |
attgttgcattattaactttcttcagtaactttggtgtttatactatattctttaatgtaacagtaattttgtaacctatatctatatgtggttatgtcc |
37217685 |
T |
|
| Q |
209 |
atata----ggtaaacttgattggatattgtgttgagggatttctatttctcgtgtatgaatacatggaaaatggaaacttaagccaacatctacataat |
304 |
Q |
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||||| |||| ||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37217686 |
atatatataggtacacttgattggatattgtgtcgagggatttctattccttgtgtatgaatacatggaaaatggaaacttaagccaacatctacataat |
37217785 |
T |
|
| Q |
305 |
tcaggtgatattatta |
320 |
Q |
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|||||||||||||||| |
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| T |
37217786 |
tcaggtgatattatta |
37217801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 37385631 - 37385529
Alignment:
| Q |
210 |
tataggtaaacttgattggatattgtgttgagggatttctatttctcgtgtatgaatacatggaaaatggaaacttaagccaacatctacataattcagg |
309 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||| || || ||||||||||| || |||||||||||||||||| |||||||| ||||||| |
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| T |
37385631 |
tataggtacacttgattggatattgtgttgagggatctctattccttgtttatgaatacatcgacaatggaaacttaagccaaaatctacatgattcagg |
37385532 |
T |
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| Q |
310 |
tga |
312 |
Q |
| |
|
||| |
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|
| T |
37385531 |
tga |
37385529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 299
Target Start/End: Original strand, 37198245 - 37198334
Alignment:
| Q |
210 |
tataggtaaacttgattggatattgtgttgagggatttctatttctcgtgtatgaatacatggaaaatggaaacttaagccaacatctac |
299 |
Q |
| |
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|||||||| |||||| ||||| ||||||||||||| || || || || ||||||||||| || |||||||||||| |||||||||||| |
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| T |
37198245 |
tataggtacgcttgatcggatactgtgttgagggatcccttttccttgtctatgaatacattgataatggaaacttaggccaacatctac |
37198334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 312
Target Start/End: Original strand, 37203257 - 37203348
Alignment:
| Q |
221 |
ttgattggatattgtgttgagggatttctatttctcgtgtatgaatacatggaaaatggaaacttaagccaacatctacataattcaggtga |
312 |
Q |
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| T |
37203257 |
ttgattggatattgtgttgaaggttttctcttccttgtctatgaatacattgacaatggaaacttgagtcaaaatcttcacgattcaggtga |
37203348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 37232140 - 37232201
Alignment:
| Q |
16 |
tgaactgaaaggcgtaacaagtgttgatcacttaaacctggttaattgtcaagcatataaca |
77 |
Q |
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||||||||||| | ||||||||||| ||||||||||||||| |||| |||| ||||||||| |
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| T |
37232140 |
tgaactgaaagtcttaacaagtgttcgtcacttaaacctggtaaattttcaaacatataaca |
37232201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 37217828 - 37217874
Alignment:
| Q |
345 |
atgatgtttcattaatttgagtactgtttgcagagaaagaactgatg |
391 |
Q |
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||||||||| ||| |||||| ||||||||||||||||||||| |||| |
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| T |
37217828 |
atgatgtttaattgatttgaatactgtttgcagagaaagaaccgatg |
37217874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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