View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11293A_low_311 (Length: 203)

Name: NF11293A_low_311
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11293A_low_311
NF11293A_low_311
[»] chr3 (2 HSPs)
chr3 (22-185)||(29018705-29018868)
chr3 (13-156)||(55429038-55429182)
[»] chr8 (2 HSPs)
chr8 (22-185)||(15917348-15917511)
chr8 (13-124)||(8567691-8567802)
[»] chr1 (3 HSPs)
chr1 (22-185)||(5171067-5171230)
chr1 (13-156)||(6770854-6770997)
chr1 (51-148)||(33931610-33931707)
[»] chr6 (4 HSPs)
chr6 (22-156)||(7022656-7022790)
chr6 (22-156)||(26292379-26292513)
chr6 (23-185)||(34252115-34252277)
chr6 (22-181)||(10570460-10570620)
[»] chr7 (2 HSPs)
chr7 (22-185)||(5952983-5953146)
chr7 (24-126)||(13583408-13583510)
[»] chr4 (2 HSPs)
chr4 (22-156)||(19816437-19816571)
chr4 (93-183)||(21374934-21375024)
[»] chr5 (2 HSPs)
chr5 (24-166)||(35946850-35946992)
chr5 (56-146)||(28175138-28175228)
[»] chr2 (1 HSPs)
chr2 (27-148)||(29763132-29763253)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 9e-69; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 29018705 - 29018868
Alignment:
Q  22 cgacatgattagatcaagagccaccttagaatctgattcaagaataatattcatgtgacccgcatcacacacaatacaaaggccatgaaaaatggcatac 121  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29018705 cgacatgattagatcaagagtcaccttagaatctaattcaagaataatgttcatgtgacccgcatcacacacaatacgaaggccatgaaaaatggcatac 29018804  T
Q  122 aattcggcagccaagcaagaagtaataccacaaaaattagaaaaatcaaacatccaatcaccat 185  Q
    |||| |||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  29018805 aatttggcagccaagcaagaagtaataccacaaaaatcagaaaaacaaaacatccaatcaccat 29018868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 55429038 - 55429182
Alignment:
Q  13 ttcgagatgcgacatgattagatcaagagccaccttagaatctgattcaagaataatattcatgtgacccgcatcacacacaatacaaaggccatg-aaa 111  Q
    ||||| || ||||||||||| ||||| ||||| | | |||||||||||||||||||| |||||||| ||||||||| || |||||| |||||| || |||    
T  55429038 ttcgacatccgacatgattaaatcaatagccatcctggaatctgattcaagaataatgttcatgtggcccgcatcatacgcaatacgaaggccgtgcaaa 55429137  T
Q  112 aatggcatacaattcggcagccaagcaagaagtaataccacaaaa 156  Q
    ||||||||||||||| || |||||||| |||||||||||||||||    
T  55429138 aatggcatacaattcagctgccaagcaggaagtaataccacaaaa 55429182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 15917348 - 15917511
Alignment:
Q  22 cgacatgattagatcaagagccaccttagaatctgattcaagaataatattcatgtgacccgcatcacacacaatacaaaggccatgaaaaatggcatac 121  Q
    ||||||||||| ||||||||||| | || ||||||||||||||||||| ||| |||||||||||||| || |||||| |||||||||||||||| |||||    
T  15917348 cgacatgattaaatcaagagccatcctaaaatctgattcaagaataatgttcttgtgacccgcatcatacgcaatacgaaggccatgaaaaatgacatac 15917447  T
Q  122 aattcggcagccaagcaagaagtaataccacaaaaattagaaaaatcaaacatccaatcaccat 185  Q
    |||| ||| ||||||||||||||||||||||||||  || ||||| | | || |||||||||||    
T  15917448 aatttggccgccaagcaagaagtaataccacaaaatctataaaaacccagcaaccaatcaccat 15917511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 8567691 - 8567802
Alignment:
Q  13 ttcgagatgcgacatgattagatcaagagccaccttagaatctgattcaagaataatattcatgtgacccgcatcacacacaatacaaaggccatgaaaa 112  Q
    ||||| || ||||||||||||||||| ||||||| |||||||||||||||||||||| |||   |||||||||||| || |||||| |||||| ||||||    
T  8567691 ttcgacatccgacatgattagatcaaaagccaccatagaatctgattcaagaataatgttcccttgacccgcatcatacgcaatacgaaggccgtgaaaa 8567790  T
Q  113 atggcatacaat 124  Q
    ||| ||||||||    
T  8567791 atgacatacaat 8567802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 5171230 - 5171067
Alignment:
Q  22 cgacatgattagatcaagagccaccttagaatctgattcaagaataatattcatgtgacccgcatcacacacaatacaaaggccatgaaaaatggcatac 121  Q
    ||||||||||| ||||||||||| | |||||||||| ||||||||||| ||  |||  ||||||||| || |||||||||||||||||||||||||||||    
T  5171230 cgacatgattaaatcaagagccatcctagaatctgactcaagaataatgtttttgtagcccgcatcatacgcaatacaaaggccatgaaaaatggcatac 5171131  T
Q  122 aattcggcagccaagcaagaagtaataccacaaaaattagaaaaatcaaacatccaatcaccat 185  Q
    |||||||| |||||| |||||||||||||||||||   ||||||||| | || |||||||||||    
T  5171130 aattcggccgccaagtaagaagtaataccacaaaatccagaaaaatccagcaaccaatcaccat 5171067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 6770997 - 6770854
Alignment:
Q  13 ttcgagatgcgacatgattagatcaagagccaccttagaatctgattcaagaataatattcatgtgacccgcatcacacacaatacaaaggccatgaaaa 112  Q
    ||||| || ||||||||||| ||||||||||| | || ||| ||||||||||||||| |||||||||||||||||| || |||||  ||| |||| ||||    
T  6770997 ttcgacattcgacatgattaaatcaagagccatcctataatttgattcaagaataatgttcatgtgacccgcatcatacgcaatatgaagaccataaaaa 6770898  T
Q  113 atggcatacaattcggcagccaagcaagaagtaataccacaaaa 156  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  6770897 atggcatacaattcggccgccaagcaagaagtaataccacaaaa 6770854  T

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Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 33931610 - 33931707
Alignment:
Q  51 aatctgattcaagaataatattcatgtgacccgcatcacacacaatacaaaggccatgaaaaatggcatacaattcggcagccaagcaagaagtaata 148  Q
    |||||||||||| |||||| |||||||||||||||||| || |||||| ||| |||| ||||||||||||||||||||| | ||| ||||||||||||    
T  33931610 aatctgattcaaaaataatgttcatgtgacccgcatcatacgcaatacgaagaccataaaaaatggcatacaattcggccgtcaaacaagaagtaata 33931707  T

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Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 156
Target Start/End: Complemental strand, 7022790 - 7022656
Alignment:
Q  22 cgacatgattagatcaagagccaccttagaatctgattcaagaataatattcatgtgacccgcatcacacacaatacaaaggccatgaaaaatggcatac 121  Q
    ||||||||||| ||||||||||| | |||||||||| ||||||||||| |||||||  |||||| || || |||||| |||||||||||||||| |||||    
T  7022790 cgacatgattaaatcaagagccatcctagaatctgactcaagaataatgttcatgtagcccgcaccatacgcaatacgaaggccatgaaaaatgacatac 7022691  T
Q  122 aattcggcagccaagcaagaagtaataccacaaaa 156  Q
    |||||||| ||||||||||||||||||||||||||    
T  7022690 aattcggccgccaagcaagaagtaataccacaaaa 7022656  T

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Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 156
Target Start/End: Original strand, 26292379 - 26292513
Alignment:
Q  22 cgacatgattagatcaagagccaccttagaatctgattcaagaataatattcatgtgacccgcatcacacacaatacaaaggccatgaaaaatggcatac 121  Q
    ||||||| ||| ||||||||||  | |||||||||||||||||||||| |||||||  || |||||| || |||||| ||||||||||||||||||||||    
T  26292379 cgacatgtttaaatcaagagccctcctagaatctgattcaagaataatgttcatgtagcctgcatcatacgcaatacgaaggccatgaaaaatggcatac 26292478  T
Q  122 aattcggcagccaagcaagaagtaataccacaaaa 156  Q
    |||||||| ||||||||||||||||||||||||||    
T  26292479 aattcggccgccaagcaagaagtaataccacaaaa 26292513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 34252277 - 34252115
Alignment:
Q  23 gacatgattagatcaagagccaccttagaatctgattcaagaataatattcatgtgacccgcatcacacacaatacaaaggccatgaaaaatggcataca 122  Q
    |||||||||| ||||||||||| | |||||||| | ||||||||||| ||| |||  || |||||| ||  ||||| |||||||||||||||||||||||    
T  34252277 gacatgattaaatcaagagccatcctagaatctcactcaagaataatgttcttgtagcctgcatcatacgtaatacgaaggccatgaaaaatggcataca 34252178  T
Q  123 attcggcagccaagcaagaagtaataccacaaaaattagaaaaatcaaacatccaatcaccat 185  Q
    ||||||| ||||||||||||||||||||||||||   ||||||||| | || |||||||||||    
T  34252177 attcggccgccaagcaagaagtaataccacaaaatacagaaaaatccagcaaccaatcaccat 34252115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 22 - 181
Target Start/End: Complemental strand, 10570620 - 10570460
Alignment:
Q  22 cgacatgattagatcaagagccaccttagaatctgattcaagaataatattcatgtgacccgcatcacacacaatacaaaggccatgaaa-aatggcata 120  Q
    |||||| |||| || |||||||| | |||||||||||||||||||||| ||||  || ||||||||| || |||||| ||| ||||||||   |  ||||    
T  10570620 cgacataattaaattaagagccatcctagaatctgattcaagaataatgttcacatggcccgcatcatacgcaatacgaagaccatgaaattgtttcata 10570521  T
Q  121 caattcggcagccaagcaagaagtaataccacaaaaattagaaaaatcaaacatccaatca 181  Q
    ||||||| |  |||||||| || |||||||||||||| |||||| | | |||| |||||||    
T  10570520 caattcgaccaccaagcaaaaaataataccacaaaaactagaaagacccaacaaccaatca 10570460  T

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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 5952983 - 5953146
Alignment:
Q  22 cgacatgattagatcaagagccaccttagaatctgattcaagaataatattcatgtgacccgcatcacacacaatacaaaggccatgaaaaatggcatac 121  Q
    ||||||||||| |||||| |||| | |||||||||||||||||||||| |||  ||| ||||||||| || ||| || |||||||||||||||| |||||    
T  5952983 cgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcccgtggcccgcatcatacgcaacacgaaggccatgaaaaatgacatac 5953082  T
Q  122 aattcggcagccaagcaagaagtaataccacaaaaattagaaaaatcaaacatccaatcaccat 185  Q
    |||||||| ||||| |||||||||||||||||||| | ||||||| | | || |||||||||||    
T  5953083 aattcggctgccaaacaagaagtaataccacaaaattcagaaaaacccagcaaccaatcaccat 5953146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 13583510 - 13583408
Alignment:
Q  24 acatgattagatcaagagccaccttagaatctgattcaagaataatattcatgtgacccgcatcacacacaatacaaaggccatgaaaaatggcatacaa 123  Q
    |||||||||||| | |||||||| ||||||| ||||||||||||||  || |||| ||  ||||| |  |||||| ||||| ||||||  ||||||||||    
T  13583510 acatgattagataatgagccaccctagaatcagattcaagaataatgctcttgtgtccaacatcatatgcaatacgaaggctatgaaaggtggcatacaa 13583411  T
Q  124 ttc 126  Q
    |||    
T  13583410 ttc 13583408  T

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Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 22 - 156
Target Start/End: Original strand, 19816437 - 19816571
Alignment:
Q  22 cgacatgattagatcaagagccaccttagaatctgattcaagaataatattcatgtgacccgcatcacacacaatacaaaggccatgaaaaatggcatac 121  Q
    ||||||||||| ||||||||||| | ||||||||||||||||||||||  |||| || ||||||||| |  |||||| ||||||||||||||| ||||||    
T  19816437 cgacatgattaaatcaagagccatcctagaatctgattcaagaataatgctcatatggcccgcatcatatgcaatacgaaggccatgaaaaatagcatac 19816536  T
Q  122 aattcggcagccaagcaagaagtaataccacaaaa 156  Q
    ||||| || ||||||||||||||||||||||||||    
T  19816537 aattcagccgccaagcaagaagtaataccacaaaa 19816571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 21375024 - 21374934
Alignment:
Q  93 caatacaaaggccatgaaaaatggcatacaattcggcagccaagcaagaagtaataccacaaaaattagaaaaatcaaacatccaatcacc 183  Q
    |||||| ||||| |||||||||||||||||||| | | | |||| ||||||||||||||||||| | ||||||| | |||| |||||||||    
T  21375024 caatacgaaggcaatgaaaaatggcatacaatttgtccgtcaagaaagaagtaataccacaaaattcagaaaaacccaacaaccaatcacc 21374934  T

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Target: chr5 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 35946850 - 35946992
Alignment:
Q  24 acatgattagatcaagagccaccttagaatctgattcaagaataatattcatgtgacccgcatcacacacaatacaaaggccatgaaaaatggcatacaa 123  Q
    |||||||||||||||||| || |  ||||| ||||||||||||||| |||||||| ||||||||| || ||||||||||| | ||||||||| ||| |||    
T  35946850 acatgattagatcaagagtcatccaagaatatgattcaagaataatgttcatgtgtcccgcatcatacgcaatacaaaggtcttgaaaaatgacatgcaa 35946949  T
Q  124 ttcggcagccaagcaagaagtaataccacaaaaattagaaaaa 166  Q
    |||||| | ||| |||||||||||||||||||||  |||||||    
T  35946950 ttcggccgtcaaacaagaagtaataccacaaaaaccagaaaaa 35946992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 28175228 - 28175138
Alignment:
Q  56 gattcaagaataatattcatgtgacccgcatcacacacaatacaaaggccatgaaaaatggcatacaattcggcagccaagcaagaagtaa 146  Q
    |||||||||||||| ||||| |  || |||||| |||||| || |||| |||||||||||||||| |||| | | | |||||||| |||||    
T  28175228 gattcaagaataatgttcatattccctgcatcatacacaagacgaaggtcatgaaaaatggcatataatttgaccgtcaagcaagtagtaa 28175138  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 29763253 - 29763132
Alignment:
Q  27 tgattagatcaagagccaccttagaatctgattcaagaataatattcatgtgacccgcatcacacacaatacaaaggccatgaaaaatggcatacaattc 126  Q
    |||||| ||||||||||||| ||| |||  ||||||||||||| ||| |||| ||| ||||| ||  ||||| |||| ||||||||||| |||| |||||    
T  29763253 tgattaaatcaagagccaccctagtatcaaattcaagaataatgttcttgtgccccacatcatacgtaatacgaaggtcatgaaaaatgacatataattc 29763154  T
Q  127 ggcagccaagcaagaagtaata 148  Q
     |  || |||||||||||||||    
T  29763153 tgtcgctaagcaagaagtaata 29763132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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