View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_35 (Length: 407)
Name: NF11293A_low_35
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 27915282 - 27915071
Alignment:
| Q |
1 |
ttattaagaaaaatctgagtactagtatatgtcggtaactggttttgtggtttatggtgcactttgtcagtgttcccacaatattgtaagatcgagaaaa |
100 |
Q |
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| T |
27915282 |
ttattaagaaaaatctgagtactaacatatgtcggtaaatggtt--gtggttcatggtgcactttgtcagtgttcccacaatattgtaagatcgaggaaa |
27915185 |
T |
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| Q |
101 |
atggcaactagaaggaaaataatgattgataaattatgagtgaatagaaatgtatgtcaactccagcccctatatagctaaccattttattgaattatac |
200 |
Q |
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| T |
27915184 |
atggcaaccagaaggaaaataatgattgataaattatgagtgaatagaaatgtatgtcaattccggcccctatatagttaaccgttttattgaattataa |
27915085 |
T |
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| Q |
201 |
agtatatgttacta |
214 |
Q |
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| T |
27915084 |
aatatatgttacta |
27915071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 229 - 395
Target Start/End: Complemental strand, 27914817 - 27914651
Alignment:
| Q |
229 |
aaacacactttcattgtctgtttattgagtaggggtcggaggacaagaacatacgtattacgtacttaaataagtaatacattggtcatggatacttgca |
328 |
Q |
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| T |
27914817 |
aaacacacttttattgtctgtttagagagtaggggtctgaggacaagaacatacgtattacgtacttaaataattaatacattggtcatggaaacttgca |
27914718 |
T |
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| Q |
329 |
tgaaagagtacttgattggccacttgcagatatatatactagattcttcgcacgatccaggtatatt |
395 |
Q |
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| T |
27914717 |
agaaagagtacgtgattggctacttgcagatatatatactagattcttcgcacgatccagctatatt |
27914651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 40 - 216
Target Start/End: Complemental strand, 27909857 - 27909681
Alignment:
| Q |
40 |
tggttttgtggtttatggtgcactttgtcagtgttcccacaatattgtaagatcgagaaaaatggcaactagaaggaaaataatgattgataaattatga |
139 |
Q |
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| T |
27909857 |
tggttttgtggttcatgatgcactttgtctgtgttcccacgatattgtaagatcaaggaaaatggcaatcagaagggatataatgattgataaattatga |
27909758 |
T |
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| Q |
140 |
gtgaatagaaatgtatgtcaactccagcccctatatagctaaccattttattgaattatacagtatatgttactagt |
216 |
Q |
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| T |
27909757 |
gtgaatagaaatgtatgtcaattccggcccctatatagttaaccattttattgaattataaaatatatgttactagt |
27909681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 395
Target Start/End: Complemental strand, 27907964 - 27907920
Alignment:
| Q |
351 |
cttgcagatatatatactagattcttcgcacgatccaggtatatt |
395 |
Q |
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| T |
27907964 |
cttgcagatatacatactagatccttcgcacgattcagctatatt |
27907920 |
T |
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