View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_37 (Length: 398)
Name: NF11293A_low_37
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 165 - 390
Target Start/End: Complemental strand, 49124171 - 49123946
Alignment:
| Q |
165 |
ttatgaatattaaaatctatgttaacacacttaacatatttacattcttctttgatgaccagaggattagaatatctacatgagcattgttaccctcgag |
264 |
Q |
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| T |
49124171 |
ttatgaatattaaaatctatgttaacacacttaacatatttacattcttctttgatgaccagaggattagaatatctacatgagcattgttaccctcgag |
49124072 |
T |
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| Q |
265 |
tgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaaggtaaaaaactgaatttactatatattttatcttcttccaca |
364 |
Q |
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| T |
49124071 |
tgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaaggtaaaaaactgaatttactatatattttatcttcttccaca |
49123972 |
T |
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| Q |
365 |
aagtattttattcaccaaagtttctt |
390 |
Q |
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|||||||||||||||||||||||||| |
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| T |
49123971 |
aagtattttattcaccaaagtttctt |
49123946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 7 - 172
Target Start/End: Complemental strand, 49124390 - 49124225
Alignment:
| Q |
7 |
cttggaatgtagttatggctttttcaatcacaacattaatcaagtatacaaaattcaaaattacaactgttaacaaattaatgaacaattccgattggag |
106 |
Q |
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| T |
49124390 |
cttggaatgtagttaaggctttttcaatcacaacattaaccaagtatacaaaattcaaaattacaactgttaacaaattaatgaacaattccgattggag |
49124291 |
T |
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| Q |
107 |
aagttatagatcgttttcattctgcatcttaaaagttttgtccccttaacaaagtttattatgaat |
172 |
Q |
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| T |
49124290 |
aagttatagatcgttttcattctgcatcttaaaagttttgtccccttaacaaagtttattatgaat |
49124225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 224 - 331
Target Start/End: Original strand, 4271421 - 4271528
Alignment:
| Q |
224 |
cagaggattagaatatctacatgagcattgttaccctcgagtgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaag |
323 |
Q |
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|||||| ||| ||||||| |||||||| || |||||| |||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4271421 |
cagaggtttaaaatatctgcatgagcactgctaccctgcagtgatccatagagatctgaaatcttctaatattcttttagatgcaaacttcaatgccaag |
4271520 |
T |
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| Q |
324 |
gtaaaaaa |
331 |
Q |
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|||||||| |
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| T |
4271521 |
gtaaaaaa |
4271528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 224 - 331
Target Start/End: Original strand, 2807765 - 2807872
Alignment:
| Q |
224 |
cagaggattagaatatctacatgagcattgttaccctcgagtgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaag |
323 |
Q |
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|||||| ||| ||||||| |||||||| || |||||| |||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2807765 |
cagaggtttaaaatatctgcatgagcactgctaccctgcagtgatccatagagatctgaaatcttctaatattcttttagatgcaaacttcaatgccaag |
2807864 |
T |
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| Q |
324 |
gtaaaaaa |
331 |
Q |
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|||||||| |
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| T |
2807865 |
gtaaaaaa |
2807872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 11683266 - 11683218
Alignment:
| Q |
23 |
ggctttttcaatcacaacattaatcaagtatacaaaattcaaaattaca |
71 |
Q |
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|||| ||||||||||||| |||| | ||||||||||||||||||||||| |
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| T |
11683266 |
ggctatttcaatcacaactttaacctagtatacaaaattcaaaattaca |
11683218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 30341290 - 30341349
Alignment:
| Q |
12 |
aatgtagttatggctttttcaatcacaacattaatcaagtatacaaaattcaaaattaca |
71 |
Q |
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|||||||||| |||| ||||||| ||||| |||| ||||| |||||| |||||||||||| |
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| T |
30341290 |
aatgtagttaaggctatttcaattacaactttaaccaagtttacaaagttcaaaattaca |
30341349 |
T |
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