View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_38 (Length: 395)
Name: NF11293A_low_38
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 7 - 378
Target Start/End: Original strand, 35286244 - 35286600
Alignment:
| Q |
7 |
gttatttaattaatatatcgtggatcaggaaagcatgaactgctttccgtgttgcggccatcagaaaaataaaaacagtaatagtaagagagagcatggt |
106 |
Q |
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| T |
35286244 |
gttatttaattaatatatcgtggatcaggaaagcatgagctgctttccgtgttgcggccatcagaaaaataaaaacagtaatagtaagagagagcatggt |
35286343 |
T |
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| Q |
107 |
tctcccacagcacaggaaatcacctctgcagcaaaaacaccaggtaattaataatgtgcctcgcctcgttatatgtatgtatatatgcgatgttttaaat |
206 |
Q |
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| T |
35286344 |
tctcccacagcacaggaaatcacctctgcagcaaaaacaccaggtaattaataatgtgcctcgcctcgttatatgtatgtatatatgcgatgttttaaat |
35286443 |
T |
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| Q |
207 |
catggtcaccgtcgcgtcacaatatatgatattgtagagaatcatgatccaatacaacttacgtgaccgcattcatattgcggtcatgtaaacataaaaa |
306 |
Q |
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| T |
35286444 |
catggtcaccgtcgcgtcacaatatatgatattgtagagaatcatgatccaata---------------cattcatattgcggtcatgtaaacataaaaa |
35286528 |
T |
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| Q |
307 |
acatcgatgttgcagtctagatcgcgttcggatacctttatttataatattcctttatttttactatttgtg |
378 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35286529 |
acatcgatgttgcagtctagatcgcgttcggagacctttatttataatattcctttatttttactatttgtg |
35286600 |
T |
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