View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_40 (Length: 394)
Name: NF11293A_low_40
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_40 |
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| [»] scaffold0279 (1 HSPs) |
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Alignment Details
Target: scaffold0279 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 20 - 346
Target Start/End: Original strand, 21227 - 21553
Alignment:
| Q |
20 |
agtcaaaatataaggcgtaaaatcttaatcaacagccgagatcccttgaatgcgttacactgtgcttttatatagattttgtctaataatttggcaatat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21227 |
agtcaaaatataaggcgtaaaatcttaatcaacagccgagatcccttgaatgcgttacactgtgcttttagatagattttgtctaataatttggcaatat |
21326 |
T |
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| Q |
120 |
gtttattaaagatttttgttcttatctgcatgcttttttggttagatatgggcaggtcctctttcaggttacagggtagctgttgtgttccttaatagag |
219 |
Q |
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| T |
21327 |
gtttattaaagatttttgttcttatctgcatgcttttttggttagatatgggcaggtcctctttcaggttacagggtagctgttgtgttccttaatagag |
21426 |
T |
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| Q |
220 |
gcccacagaagcagattgatataacagctaattgggatgacattggcattccaccaaaaactgttgttcaagcaagagacctttgggaggtaattcattg |
319 |
Q |
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||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21427 |
gcccacagaagcatatagatataacagctaattggaatgacattggcattccaccaaaaactgttgttcaagcaagagacctttgggaggtaattcattg |
21526 |
T |
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| Q |
320 |
tacttttgtttacattcaatttatgtt |
346 |
Q |
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|||||||||| |||||||||||||||| |
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| T |
21527 |
tacttttgttgacattcaatttatgtt |
21553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 20 - 346
Target Start/End: Original strand, 27527346 - 27527672
Alignment:
| Q |
20 |
agtcaaaatataaggcgtaaaatcttaatcaacagccgagatcccttgaatgcgttacactgtgcttttatatagattttgtctaataatttggcaatat |
119 |
Q |
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| T |
27527346 |
agtcaaaatataaggcgtaaaatcttaatcaacagccgagatcccttgaatgcgttacactgtgcttttagatagattttgtctaataatttggcaatat |
27527445 |
T |
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| Q |
120 |
gtttattaaagatttttgttcttatctgcatgcttttttggttagatatgggcaggtcctctttcaggttacagggtagctgttgtgttccttaatagag |
219 |
Q |
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| T |
27527446 |
gtttattaaagatttttgttcttatctgcatgcttttttggttagatatgggcaggtcctctttcaggttacagggtagctgttgtgttccttaatagag |
27527545 |
T |
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| Q |
220 |
gcccacagaagcagattgatataacagctaattgggatgacattggcattccaccaaaaactgttgttcaagcaagagacctttgggaggtaattcattg |
319 |
Q |
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||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27527546 |
gcccacagaagcatatagatataacagctaattggaatgacattggcattccaccaaaaactgttgttcaagcaagagacctttgggaggtaattcattg |
27527645 |
T |
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| Q |
320 |
tacttttgtttacattcaatttatgtt |
346 |
Q |
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|||||||||| |||||||||||||||| |
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| T |
27527646 |
tacttttgttgacattcaatttatgtt |
27527672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 102 - 346
Target Start/End: Original strand, 27533152 - 27533396
Alignment:
| Q |
102 |
ctaataatttggcaatatgtttattaaagatttttgttcttatctgcatgcttttttggttagatatgggcaggtcctctttcaggttacagggtagctg |
201 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||| || |||||||||| |
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| T |
27533152 |
ctaataatttggcactatgtttattaaagatttttgttcttatctgcatgttttgttggatagatatgggcaggtcctctttcaggatatagggtagctg |
27533251 |
T |
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| Q |
202 |
ttgtgttccttaatagaggcccacagaagcagattgatataacagctaattgggatgacattggcattccaccaaaaactgttgttcaagcaagagacct |
301 |
Q |
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||||||| ||||||| |||| | |||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27533252 |
ttgtgttgcttaataaaggcactcagaagcatatagatataacagctaattggaatgacattggcattccaccaaaaactgttgttcaagcaagagacct |
27533351 |
T |
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| Q |
302 |
ttgggaggtaattcattgtacttttgtttacattcaatttatgtt |
346 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27533352 |
ttgggaggtaattcattgtacttttgttgacattcaatttatgtt |
27533396 |
T |
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