View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11293A_low_41 (Length: 393)
Name: NF11293A_low_41
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_41 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0002 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 37 - 387
Target Start/End: Complemental strand, 337279 - 336929
Alignment:
| Q |
37 |
ttgttcagtaaaatgtttagatatgaatcactcattacagcacatcaaaagcaaatgtagaaatgaaatactagtgtccatacatgcagatccagttaac |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
337279 |
ttgttcagtaaaatgtttagatatgaatcactcactacagcacatcaaaagcaaatgtagaaatgaaatactagtgtccatacatgcagatccagttaac |
337180 |
T |
|
| Q |
137 |
atatattattagagtagatcagaattcagaagggataccttatcttttacattcccgaggacaattctataaggagcaattccaggaagatgagggagtt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
337179 |
atatattattagagtagatcagaattcagaagggataccttatcttttacattcccaaggacaattctataaggagcaattccaggaagatgagggagtt |
337080 |
T |
|
| Q |
237 |
ttggctccaaaagcttctgaaaactggatcttcctatttgggattctgcaaacaatttcctttgagcaagaagttgttgattagagttggaagaaggaga |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
337079 |
ttggctccaaaagcttctgaaaactggatcttcctatttgggattctgcaaacaatttcctttgagcaagaagttgttgattagagttggaagaaggaga |
336980 |
T |
|
| Q |
337 |
tcgtggaatgctcgctgcacttgttggggatgcatgactattggaacttcc |
387 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
336979 |
tcgtggaatgctcgctgcacttgttggagatgcatgactattggaacttcc |
336929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 171 - 264
Target Start/End: Complemental strand, 42172600 - 42172507
Alignment:
| Q |
171 |
ataccttatcttttacattcccgaggacaattctataaggagcaattccaggaagatgagggagttttggctccaaaagcttctgaaaactgga |
264 |
Q |
| |
|
|||||||||| |||||||| || ||||||| |||||||||||||||||||||||| |||||||| | |||||||||||| |||||||||||||| |
|
|
| T |
42172600 |
ataccttatcctttacatttcccaggacaactctataaggagcaattccaggaagttgagggagctgtggctccaaaagtttctgaaaactgga |
42172507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University