View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11293A_low_43 (Length: 383)
Name: NF11293A_low_43
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_43 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 21 - 365
Target Start/End: Complemental strand, 25950426 - 25950082
Alignment:
| Q |
21 |
agttacagaattgtatcctgaagaagctctagagttattcagttaccatgcattaaggaaaaaggatcctccaccagactttctgagtttttcaaagcaa |
120 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25950426 |
agttacagaattgtatgctgaagaagctctagagttattcagttaccatgcattgaggaaaaaggatcctccaccagactttctgagtttttcaaagcaa |
25950327 |
T |
|
| Q |
121 |
attgtgtctcttacgggaagaatgccattggctttggaagtgtttggttgctttctgtttgggaagagaaggttggaagaatgggaagatgttcttgaga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||| |||||| || ||| |
|
|
| T |
25950326 |
attgtgtctcttacgggaagaatgccattggctttggaagtgtttggttgctttctgtttggtaagagaagggtggacgaatgggaggatgttgttaaga |
25950227 |
T |
|
| Q |
221 |
agctgagaacaattcggcccgggaatcttcatgatgtgttgaagataagttatgatgggcttgaggaacaagagaagtgtatattccttgatattgcatg |
320 |
Q |
| |
|
|||||| ||| ||||| || ||||||||||||||||||||||||||||||||||||||| | || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25950226 |
agctgaaaactattcgccctgggaatcttcatgatgtgttgaagataagttatgatgggttggacgaacaagagaaatgtatattccttgatattgcatg |
25950127 |
T |
|
| Q |
321 |
tttctttgttcagatgggaatgaagcgcgacgatgtgattgatgt |
365 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25950126 |
tttctttgttcagatgggcatgaagcgcgacgatgtgattgatgt |
25950082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 120 - 365
Target Start/End: Complemental strand, 25959608 - 25959363
Alignment:
| Q |
120 |
aattgtgtctcttacgggaagaatgccattggctttggaagtgtttggttgctttctgtttgggaagagaaggttggaagaatgggaagatgttcttgag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25959608 |
aattgtgtctcttacgggaagaatgccattggctttggaagtgtttggttgctttctgtttgggaagagaaggttggaagaatgggaagatgttcttgag |
25959509 |
T |
|
| Q |
220 |
aagctgagaacaattcggcccgggaatcttcatgatgtgttgaagataagttatgatgggcttgaggaacaagagaagtgtatattccttgatattgcat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25959508 |
aagctgagaacaattcggcccgggaatcttcatgatgtgttgaagataagttatgatgggcttgaggaacaagagaagtgtatattccttgatattgcat |
25959409 |
T |
|
| Q |
320 |
gtttctttgttcagatgggaatgaagcgcgacgatgtgattgatgt |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25959408 |
gtttctttgttcagatgggaatgaagcgcgacgatgtgattgatgt |
25959363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University