View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_44 (Length: 381)
Name: NF11293A_low_44
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_44 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 23 - 381
Target Start/End: Original strand, 7289681 - 7290039
Alignment:
| Q |
23 |
atgtagatcaattggcattgaagaaatgatgagttattgttctttagaaaattaactcgcttgttctcatcatcctcaaagtccattgtgtagataaata |
122 |
Q |
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| T |
7289681 |
atgtagatcaattggcattgaagaaatgatgagttattgttctttagaaaattaactcgtttgttctcatcatcctcaaagtccattgtgtagataaata |
7289780 |
T |
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| Q |
123 |
taataattaaaaattattggatgttgcaaatttttatccatctttgcatagctaaaccacttgtacttaactcatgaatgttttgttgttttgtatgttg |
222 |
Q |
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| T |
7289781 |
taataattaaaaattattggatgttgcaaatttttatccatctttgcatagctaaaccacttgtacttaactcatgaatgttttgttgttttgtatgttg |
7289880 |
T |
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| Q |
223 |
cacctattttgataccttacaatagttcaaaattgtgctttcggcatccactgtattatgggcaactttgcattttatttcatgacaactatggcaaaaa |
322 |
Q |
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| T |
7289881 |
cacctattttgataccttaaaatagtttgaaattgtgcttccggcatccactgtattatgggcaactttgcattttattacatgacaattatggcaaaaa |
7289980 |
T |
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| Q |
323 |
gcataaatattttatactttattaatgaaatgttgattgcttccatgttagttatctga |
381 |
Q |
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| T |
7289981 |
gcataaatattttatactttattaatgaaatgttgattgcttccatgttagttatctga |
7290039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 23 - 166
Target Start/End: Complemental strand, 1196899 - 1196757
Alignment:
| Q |
23 |
atgtagatcaattggcattgaagaaatgatgagttattgttctttagaaaattaactcgcttgttctcatcatcctcaaagtccattgtgtagataaata |
122 |
Q |
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| T |
1196899 |
atgtagatcaattagcattgaagagatgatgggttattgttctttagaaaatcaacttgcttgttctcatcatcctcaaagtccattgtgtagataaata |
1196800 |
T |
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| Q |
123 |
taataattaaaaattattggatgttgcaaatttttatccatctt |
166 |
Q |
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| T |
1196799 |
taataatt-aatattattggatgttgcaaatttttatccatctt |
1196757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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