View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_46 (Length: 377)
Name: NF11293A_low_46
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_46 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 56 - 377
Target Start/End: Original strand, 12171101 - 12171421
Alignment:
| Q |
56 |
tccagctcagtctaagtgaatcttgttacttttcttagttcaaagttaaaaatttctctgaaaa--gagtgtata-taaattaatattgtcatgtgattg |
152 |
Q |
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| T |
12171101 |
tccagctcaggctaagtgaatct-gctacttttcttggttcaaagttaaaaatttgtctgaaaattgagtgtataataacttaaaat-gtaatgt-att- |
12171196 |
T |
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| Q |
153 |
tgtggagactgtattcttctcattttctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtca |
252 |
Q |
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| T |
12171197 |
--tggagactggaattttctcattttctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtca |
12171294 |
T |
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| Q |
253 |
actgcttgtgctggaactgtagttaccgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttctt |
350 |
Q |
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| T |
12171295 |
actgcttgtgctagaactgtagttgctgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttctt |
12171394 |
T |
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| Q |
351 |
gttttcactggtgattctttcctatga |
377 |
Q |
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| T |
12171395 |
attttcactggtgattatttcctatga |
12171421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 56 - 377
Target Start/End: Original strand, 12415529 - 12415849
Alignment:
| Q |
56 |
tccagctcagtctaagtgaatcttgttacttttcttagttcaaagttaaaaatttctctgaaaa--gagtgtata-taaattaatattgtcatgtgattg |
152 |
Q |
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| T |
12415529 |
tccagctcaggctaagtgaatct-gctacttttcttggttcaaagttaaaaatttgtctgaaaattgagtgtataataacttaaaat-gtaatgt-att- |
12415624 |
T |
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| Q |
153 |
tgtggagactgtattcttctcattttctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtca |
252 |
Q |
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| T |
12415625 |
--tggagactggaattttctcattttctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtca |
12415722 |
T |
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| Q |
253 |
actgcttgtgctggaactgtagttaccgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttctt |
350 |
Q |
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| T |
12415723 |
actgcttgtgctagaactgtagttgctgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttctt |
12415822 |
T |
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| Q |
351 |
gttttcactggtgattctttcctatga |
377 |
Q |
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| T |
12415823 |
attttcactggtgattatttcctatga |
12415849 |
T |
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