View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11293A_low_47 (Length: 375)
Name: NF11293A_low_47
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_47 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 12 - 369
Target Start/End: Complemental strand, 31784794 - 31784437
Alignment:
| Q |
12 |
gttgtatgcgcctttttagccgtatctgcaagtaaatagggatcatgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattaggaa |
111 |
Q |
| |
|
|||||||| ||| ||||||||| |||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31784794 |
gttgtatgtgcccttttagccgcatctgcgagtaaatggggatcgtgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattaggaa |
31784695 |
T |
|
| Q |
112 |
tgacatttattgaattgttagctacaccagtgcttttgtttctgatgtctctaaccatatgttcaacttttatcttgatacctccgccccttacactcat |
211 |
Q |
| |
|
||| |||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
31784694 |
tgatgtttattgaattgttaggtacaccgatgctttggtttctgatgtctctaaccatatgttcaactttgatcttgatacctccgccccgtacactcag |
31784595 |
T |
|
| Q |
212 |
tattctttcctcataatagttggaaggttcccttgtttgcatcaaactattttggcaacctgagaaagaaaaaacaaatattgcattgtttacactaact |
311 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31784594 |
cattctttcctcagaatagttggaaggttcccttgtttgcatcaaactattttggtaacctgagaaagaaaaaacaaatattgcattgtttgcactaact |
31784495 |
T |
|
| Q |
312 |
tctcgtccatgcgagtctgtgatttttcctgtcttgatggcttgagacagactgcttt |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31784494 |
tctcgtccatgcgagtctgtgatttttcctgtcttgatggcttgagacaaactgcttt |
31784437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 51 - 324
Target Start/End: Original strand, 19631618 - 19631893
Alignment:
| Q |
51 |
ggatcatgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattaggaatgacatttattgaattgttagctacaccagtgcttttgt |
150 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
19631618 |
ggatcgtgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattaggaatgacatttattgaattgttagctacaccgatgctttggt |
19631717 |
T |
|
| Q |
151 |
ttctgatgtctctaaccatatgttcaacttttatcttgatacctccgccccttacactcattattc--tttcctcataatagttggaaggttcccttgtt |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19631718 |
ttctgatgtctctaaccatatgttcaacttttatcttgatacctccgccccttacacttattattctttttcctcataatagttggaaggttcccttgtt |
19631817 |
T |
|
| Q |
249 |
tgcatcaaactattttggcaacctgagaaagaaaaaacaaatattgcattgtttacactaacttctcgtccatgcg |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
19631818 |
tgcatcaaactattttggcaacctgagaaagaaaaaacaaatagtacattgtttacactaacttctcgtccatgcg |
19631893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 19633725 - 19633774
Alignment:
| Q |
320 |
atgcgagtctgtgatttttcctgtcttgatggcttgagacagactgcttt |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19633725 |
atgcgagtctgtgatttttcctgtcttgatggcttgagacaaactgcttt |
19633774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University