View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11293A_low_5 (Length: 515)
Name: NF11293A_low_5
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 82 - 321
Target Start/End: Complemental strand, 19407519 - 19407277
Alignment:
| Q |
82 |
cttatttcctagaataagagggatcggggaaatatattaccttgactcctgagtagtttatttccatttttattctccaaaagtctacgaggagttattt |
181 |
Q |
| |
|
||||||||| | ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| |||| || || |||||||||||| |
|
|
| T |
19407519 |
cttatttccaataataagagggatcagggaattatattaccttgacttttgagtagtttatttccatttttattgtccat--gtttatgaggagttattt |
19407422 |
T |
|
| Q |
182 |
tcttgtttatgatcagttattgtacttacttttctgtttcctagattgagggtggctgtgtgcctcctccctctatttaaaccttgtaactcttttattc |
281 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19407421 |
tcttgtttatgagcagttattgtatttacttttcagtttcctagactgagggtggctgtgtgcctcctccctctatttaaaccttgtaactcttttactc |
19407322 |
T |
|
| Q |
282 |
caaa-----cagaatacaaaatatatattctctgaatttctacat |
321 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
19407321 |
caaacatatcaaaatacaaaatatatattctctgaatttctacat |
19407277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 312 - 466
Target Start/End: Complemental strand, 19412029 - 19411875
Alignment:
| Q |
312 |
atttctacatggtatcagtagcaaaccggtccttaccatgaccaaatacggtatggctacagaaaaagaaacctccatactcaaagaggatgacaatcga |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
19412029 |
atttctacatggtatcagtagcaaaccggtccttaccatgaccaaatacggtatggctacagaaaaagaaacctccatactcaaagaggatgacaatcaa |
19411930 |
T |
|
| Q |
412 |
ccctcttcacaacaagtcagcaccaatcatggtgtaaccttggaggccaccaccc |
466 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19411929 |
tcctcttcacaataagtcagcaccaatcatggtgtaaccttggaggccacgaccc |
19411875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 83 - 320
Target Start/End: Original strand, 19046730 - 19046972
Alignment:
| Q |
83 |
ttatttcctagaataagagggatcggggaaatatattaccttgactcctgagtagtt----tatttccatttttattctccaaaagtctacgaggagtta |
178 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||| || || | ||||||| |
|
|
| T |
19046730 |
ttatttcctagaataagaggggtctgggaattatattaccttgactcgtgagtagttagtttatttccatttttattctccat--gtttatggggagtta |
19046827 |
T |
|
| Q |
179 |
ttttcttgtttatgatcagttattgtacttacttttctgtttcctagattgagggtggctgtgtgcctcctccctctatttaaaccttgtaactctttta |
278 |
Q |
| |
|
||||||||||||||| ||||||| ||| ||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19046828 |
ttttcttgtttatgagcagttatggtatttatttttctgtttcctagactgagggtggttgtgtgcctcctccctctatttaaaccttgtaactcttcta |
19046927 |
T |
|
| Q |
279 |
ttccaaac---agaatacaaaatatatattctctgaatttctaca |
320 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||| |||||||| |
|
|
| T |
19046928 |
ttccaaacatgagaatacagcatatattttctctgagtttctaca |
19046972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 83 - 320
Target Start/End: Complemental strand, 19451550 - 19451313
Alignment:
| Q |
83 |
ttatttcctagaataagagggatcggggaaatatattaccttgactcctgagtagtttatttccatttttattctccaaaagtctacgaggagttatttt |
182 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| ||||| | | | ||||||||||||||||| |||||||| || |||||||||||||||| |
|
|
| T |
19451550 |
ttatttcctagaataagagggatctgggaattatattactttgacccttca-tagtttatttccattttcattctccat--gtttacgaggagttatttt |
19451454 |
T |
|
| Q |
183 |
cttgtttatgatcagttattgtacttacttttctgtttcctagattgagggtggctgtgtgcctcctccctctatttaaaccttgtaactcttttattcc |
282 |
Q |
| |
|
||||||||| ||| |||||| |||||||||||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
19451453 |
--tgtttatgagtagtcattgtatttacttttctgtttcctagactgatggtggttgtgtgcctgatccctctatttaaaccttgtaactattttattcc |
19451356 |
T |
|
| Q |
283 |
aaac-----agaatacaaaatatatattctctgaatttctaca |
320 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
19451355 |
aaacatatgagaatacaaaatatatattctctaaatttctaca |
19451313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 83 - 320
Target Start/End: Original strand, 19529526 - 19529763
Alignment:
| Q |
83 |
ttatttcctagaataagagggatcggggaaatatattaccttgactcctgagtagtttatttccatttttattctccaaaagtctacgaggagttatttt |
182 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| ||||| | | | ||||||||||||||||| |||||||| || |||||||||||||||| |
|
|
| T |
19529526 |
ttatttcctagaataagagggatctgggaattatattactttgacccttca-tagtttatttccattttcattctccat--gtttacgaggagttatttt |
19529622 |
T |
|
| Q |
183 |
cttgtttatgatcagttattgtacttacttttctgtttcctagattgagggtggctgtgtgcctcctccctctatttaaaccttgtaactcttttattcc |
282 |
Q |
| |
|
||||||||| ||| |||||| |||||||||||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
19529623 |
--tgtttatgagtagtcattgtatttacttttctgtttcctagactgatggtggttgtgtgcctgatccctctatttaaaccttgtaactattttattcc |
19529720 |
T |
|
| Q |
283 |
aaac-----agaatacaaaatatatattctctgaatttctaca |
320 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
19529721 |
aaacatatgagaatacaaaatatatattctctaaatttctaca |
19529763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University