View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_51 (Length: 368)
Name: NF11293A_low_51
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_51 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 68 - 368
Target Start/End: Complemental strand, 47673740 - 47673439
Alignment:
| Q |
68 |
gtctaaatatttttgctcaaaacccgtgccagggtggatcgggtatgcactaccgccagtgaagtttccgagcatttggttacattcgtggtagcggaaa |
167 |
Q |
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| T |
47673740 |
gtctgaatatatttgctctaaaaccgtgtcacggttgatctggtaggcactaccgccagtgaagtttccgagcatttggttacattcgtggtagcggaaa |
47673641 |
T |
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| Q |
168 |
atgagttggtcgctagcttcagtttttagtatgaaaaacaaaggaagaagtaaaaacagaagacaacgccaagaaatcatagtactctctaccct-ggaa |
266 |
Q |
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| T |
47673640 |
atgagctggtcgctagcttcagtttttagtatgaaaaacaaaggaagaagtaaaaacagaagacaacgccaagaaatcatagtactctctaccctgggaa |
47673541 |
T |
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| Q |
267 |
ctgttgttatgagaaaataatggaagaatgannnnnnnggcaggaaactgttagaattaatgtagaaagtaggcaattatagctctttcgtgctactagt |
366 |
Q |
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| T |
47673540 |
ctgttgttatgagaaaataatggaagaatgatttttttggcaggaaactgttagaattaatgtagaaagtaggcaattatagctctttcgtgctactagt |
47673441 |
T |
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| Q |
367 |
ac |
368 |
Q |
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| T |
47673440 |
ac |
47673439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 149 - 258
Target Start/End: Complemental strand, 47685785 - 47685679
Alignment:
| Q |
149 |
acattcgtggtagcggaaaatgagttggtcgctagcttcagtttttagtatgaaaaacaaaggaagaagtaaaaacagaagacaacgccaagaaatcata |
248 |
Q |
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| T |
47685785 |
acattcatggtagcggaaaatgagctggtcgctggcttcagatttaagtatgaaaaaca---gaagaagtaaaaacagaagacagcgcctagaaatcata |
47685689 |
T |
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| Q |
249 |
gtactctcta |
258 |
Q |
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| T |
47685688 |
gtactttcta |
47685679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 344
Target Start/End: Complemental strand, 47685620 - 47685582
Alignment:
| Q |
306 |
gcaggaaactgttagaattaatgtagaaagtaggcaatt |
344 |
Q |
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| T |
47685620 |
gcaggaaactgttagaattaatgtagaaaataagcaatt |
47685582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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