View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_54 (Length: 367)
Name: NF11293A_low_54
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 5 - 347
Target Start/End: Original strand, 8260560 - 8260902
Alignment:
| Q |
5 |
gaaagtggatgcagattaattctgcatgactacaaacgtgagagataagagttaacagggaattatgaaactacaattggagctctctttgatttttatt |
104 |
Q |
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| T |
8260560 |
gaaagtggatgcagattaatactgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctctctttgatttttctt |
8260659 |
T |
|
| Q |
105 |
tgctcttttgtttctataaagatgaagatttcaatttagatgatttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaact |
204 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8260660 |
tgctcttttgtttctctaaagatgaagatttcaatttagatgatttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaact |
8260759 |
T |
|
| Q |
205 |
taagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcactttgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
8260760 |
taagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcactttgaagagggttttctgtttatgtaagtgtggaaagctgaaatgatttagttg |
8260859 |
T |
|
| Q |
305 |
taggttgaacttcatgtagttaacttgatctatttatagatat |
347 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8260860 |
taggttgaacttcatgtagttaacttgatctatttatagatat |
8260902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 30 - 344
Target Start/End: Original strand, 8265551 - 8265866
Alignment:
| Q |
30 |
atgactacaaacgtgagagataagagttaacagggaattatgaaactacaattggagctctctttgatttttatttgctcttttgtttctataaagatga |
129 |
Q |
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||||||||||||| ||||||||||||||| ||||||| | | |||||||||||||||| ||||||||||| || ||||||||||||| ||||||||| |
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| T |
8265551 |
atgactacaaacgagagagataagagttagcagggaaatgatatactacaattggagctccctttgatttttccttactcttttgtttctctaaagatga |
8265650 |
T |
|
| Q |
130 |
agatttcaatttagatgatttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat- |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8265651 |
agatttcaatttagatgatttttcatcataatcagaaacttgagacgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccata |
8265750 |
T |
|
| Q |
229 |
caaaaagtgatttaatttgcactttgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagttaac |
328 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
8265751 |
aaaaaagtgatttaatttgcactttgaagtgggtttcttgtttatgtaagtgtggaaagctgaaatgatttagttgtgggttgaacttcatgtaattaac |
8265850 |
T |
|
| Q |
329 |
ttgatctatttataga |
344 |
Q |
| |
|
|||||| ||||||||| |
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| T |
8265851 |
ttgatccatttataga |
8265866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 30 - 344
Target Start/End: Original strand, 8258478 - 8258796
Alignment:
| Q |
30 |
atgactacaaacgtgagagataagagttaacagggaattatgaaactacaattggagctctctttgatttttatttgctcttttgtttctataaagatga |
129 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| | | |||||||||||||||| ||||||||||| || ||||||||||||| ||||||||| |
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| T |
8258478 |
atgactacaaacgtgagagataagagttagtagggaaatgatatactacaattggagctccctttgatttttccttactcttttgtttctctaaagatga |
8258577 |
T |
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| Q |
130 |
agatttcaatttagatgatttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat- |
228 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| | |||||||||||||||||| |
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| T |
8258578 |
agatttcaatttagatgatttttcatcataatcagaaacttgagatgatgagtttgaagaatggccaaagcaacttaaaatggatgaaatcaaagccata |
8258677 |
T |
|
| Q |
229 |
caaaaagtgatttaatttgcactttgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagt---t |
325 |
Q |
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|||||||||||||||||||||||||||| ||||||| |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| | | |
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| T |
8258678 |
aaaaaagtgatttaatttgcactttgaagtgggttttttgtttatgtaagtgtgcaaagctgaaatgatttagttgtgggttgaacttcatgtaattaat |
8258777 |
T |
|
| Q |
326 |
aacttgatctatttataga |
344 |
Q |
| |
|
||||||||||||||||||| |
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| T |
8258778 |
aacttgatctatttataga |
8258796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 48 - 251
Target Start/End: Original strand, 8352761 - 8352964
Alignment:
| Q |
48 |
gataagagttaacagggaattatgaaactacaattggagctctctttgatttttatttgctcttttgtttctataaagatgaagatttcaatttagatga |
147 |
Q |
| |
|
||||| ||||||||||||| || ||||||||||||| ||||| || ||||||| || |||||| ||| | | |||||||||||||| ||| |||||| |
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| T |
8352761 |
gataatagttaacagggaaataagaaactacaattgaagctccattagatttttcctttctctttaatttttctgaagatgaagatttcgattgagatga |
8352860 |
T |
|
| Q |
148 |
tttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttg |
247 |
Q |
| |
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|||||||||||||||| |||||||||| ||||||| ||||| | ||||||||| | || || |||||||||||||||||||||||||||||| |||| |
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| T |
8352861 |
tttttcatcataatcataaacttgagaagatgagttcgaagaaggaccaaagcaattgaaaaatgatgaaatcaaagccatcaaaaagtgatttggtttg |
8352960 |
T |
|
| Q |
248 |
cact |
251 |
Q |
| |
|
|||| |
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| T |
8352961 |
cact |
8352964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 59 - 228
Target Start/End: Original strand, 8356339 - 8356508
Alignment:
| Q |
59 |
acagggaattatgaaactacaattggagctctctttgatttttatttgctcttttgtttctataaagatgaagatttcaatttagatgatttttcatcat |
158 |
Q |
| |
|
|||||||| || | ||||||||||||||||| | ||||||||| ||||||||| |||||| | ||| ||||||||||| || |||||| |||| | ||| |
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| T |
8356339 |
acagggaaataaggaactacaattggagctcccattgatttttccttgctctttggtttctctgaagttgaagatttcatttgagatgaattttgagcat |
8356438 |
T |
|
| Q |
159 |
aatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat |
228 |
Q |
| |
|
|||||||||||||||||||||||| | |||| | ||||||||| | ||||| | | ||||||||||||| |
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|
| T |
8356439 |
aatcagaaacttgagatgatgagtttgaagagagaccaaagcaattgaagaacggtaaaatcaaagccat |
8356508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 251
Target Start/End: Original strand, 8350014 - 8350220
Alignment:
| Q |
27 |
tgcatgactacaaacgtgagagataagagttaacagggaattatgaaactacaattggagctctctttgatttttatttgctcttttgtttctataaaga |
126 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||||||||||| || ||||||| ||||||||||| ||||||||||| || |||||| |
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| T |
8350014 |
tgcatgactacaagcgtgagggataatagttaacagggaaataagaaactataattggagctccctttgatttttccttcctcttt-------------- |
8350099 |
T |
|
| Q |
127 |
tgaagatttcaatttagatgatttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagcc |
226 |
Q |
| |
|
|||||| || | |||| |||||| ||| ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| ||||||||||||||| |
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|
| T |
8350100 |
----gatttctcttgacatgaattttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagcc |
8350195 |
T |
|
| Q |
227 |
atcaaaaagtgatttaatttgcact |
251 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
8350196 |
atcaaaaagtgatttaatttgcact |
8350220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 73 - 228
Target Start/End: Original strand, 8360526 - 8360681
Alignment:
| Q |
73 |
aactacaattggagctctctttgatttttatttgctcttttgtttctataaagatgaagatttcaatttagatgatttttcatcataatcagaaacttga |
172 |
Q |
| |
|
||||||||||||||||| ||||||||| ||| ||||| |||||| | ||| ||||||||||| || |||||| |||||| ||||||||||||||||| |
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| T |
8360526 |
aactacaattggagctcctattgatttttccttgatctttggtttctctgaagttgaagatttcatttgagatgaattttcaacataatcagaaacttga |
8360625 |
T |
|
| Q |
173 |
gatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat |
228 |
Q |
| |
|
|||||| ||| | |||| | || |||||| | ||||| | ||||||||||||||| |
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|
| T |
8360626 |
gatgataagtttgaagagagaccgaagcaattgaagaaagctgaaatcaaagccat |
8360681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 8252959 - 8253046
Alignment:
| Q |
144 |
atgatttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaa |
231 |
Q |
| |
|
|||| |||||| ||| ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| |||||||||||||||||||| |
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| T |
8252959 |
atgaattttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaa |
8253046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 8252867 - 8252952
Alignment:
| Q |
34 |
ctacaaacgtgagagataagagttaacagggaattatgaaactacaattggagctctctttgatttttatttgctcttttgtttct |
119 |
Q |
| |
|
|||||| ||||||||| || |||||||| ||| || |||||| |||||||||||| ||||||||||| || |||||| |||||| |
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| T |
8252867 |
ctacaagcgtgagagacaattgttaacagagaaataagaaactgcaattggagctccctttgatttttccttcctctttggtttct |
8252952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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