View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11293A_low_57 (Length: 364)
Name: NF11293A_low_57
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 337
Target Start/End: Original strand, 32368878 - 32369206
Alignment:
| Q |
9 |
attgctagttttgaattgtaatccaaggaaatatgatagtcttcccaaatcagtcatttcaaattcatactgcatagtgtatttgaacttctcaatctca |
108 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||| ||||||||||||||||||| |
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|
| T |
32368878 |
attgctagttttgaattctaatccaaggaaatatgatagtcttcctaaataagtcatttcaaattcacactgcatagtgtgtttgaacttctcaatctca |
32368977 |
T |
|
| Q |
109 |
ctttgattgctaccagtcaccaataggtcatctacatataagaagatgatagttatgtttgcatcattcattttctgaacatatataccatacttagcct |
208 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||||||||||| | || | ||||||||| ||||||| ||||||||||||||| ||||||| ||| | |
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|
| T |
32368978 |
ctttgattacttccagttaccaataggtcatctacatataagcatatcacagttatgttctattcattcagtttctgaacatatattccatactcagctt |
32369077 |
T |
|
| Q |
209 |
tgcatttcttgaaaccaatttgaagtaggaacaactcaatcctcttgttccatgctctaggtgtttgtttcaagccataaagtgttttatgtaacttgtc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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|
| T |
32369078 |
tgcatttcttgaaaccaatttgaagtaggaactgatcaatcctcttgttccatgctctaggtgtttgtttcaagccataaagtgctttgtgtaacttgta |
32369177 |
T |
|
| Q |
309 |
catcaaatgctccttcccttctatttcaa |
337 |
Q |
| |
|
|| || |||||||||||||| || ||||| |
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|
| T |
32369178 |
caccacatgctccttcccttttacttcaa |
32369206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 8169256 - 8169354
Alignment:
| Q |
48 |
tcttcccaaatcagtcatttcaaattcatactgcatagtgtatttgaacttctcaatctcactttgattgctaccagtcaccaataggtcatctacata |
146 |
Q |
| |
|
|||||| || || ||||||| ||||||| ||||||| |||| |||||| |||||||||||||||| |||||| ||||| || ||||| ||||| ||||| |
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| T |
8169256 |
tcttcctaagtcggtcattttaaattcacactgcattgtgtgtttgaatttctcaatctcactttaattgcttccagttactaatagatcatccacata |
8169354 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 321
Target Start/End: Original strand, 8169384 - 8169524
Alignment:
| Q |
181 |
ttctgaacatatataccatacttagccttgcatttcttgaaaccaatttgaagtaggaacaactcaatcctcttgttccatgctctaggtgtttgtttca |
280 |
Q |
| |
|
|||||||||| |||||||||| ||| |||||| | ||||| |||| ||||| | |||| | ||||| ||||||||||||||||||| | | || | |
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|
| T |
8169384 |
ttctgaacatgcataccatactcagctttgcatcttttgaatccaagttgaatcatgaactagtcaattctcttgttccatgctctagaagcctacttaa |
8169483 |
T |
|
| Q |
281 |
agccataaagtgttttatgtaacttgtccatcaaatgctcc |
321 |
Q |
| |
|
|||||||||||| ||||||||| |||| || || ||||||| |
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|
| T |
8169484 |
agccataaagtgatttatgtaatttgtacaccatatgctcc |
8169524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 8 - 307
Target Start/End: Complemental strand, 5242910 - 5242611
Alignment:
| Q |
8 |
cattgctagttttgaattgtaatccaaggaaatatgatagtcttcccaaatcagtcatttcaaattcatactgcatagtgtatttgaacttctcaatctc |
107 |
Q |
| |
|
||||||| | |||||||| |||||||||||||||||| |||||||| ||||||| ||||||||||||| || ||||||||| ||||||||| |||||||| |
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|
| T |
5242910 |
cattgctggctttgaattctaatccaaggaaatatgacagtcttccaaaatcagacatttcaaattcacaccgcatagtgtgtttgaacttttcaatctc |
5242811 |
T |
|
| Q |
108 |
actttgattgctaccagtcaccaataggtcatctacatataagaagatgatagttatgtttgcatcattcattttctgaacatatataccatacttagcc |
207 |
Q |
| |
|
| | ||||||| |||| |||||||||||||||||||||||||| ||| ||| || |||| | | | ||| || ||||||||||| ||||||| ||| |
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|
| T |
5242810 |
attacgattgcttccaggcaccaataggtcatctacatataagaggatcataattgtgttctctttagtcaggttatgaacatatattccatactcagct |
5242711 |
T |
|
| Q |
208 |
ttgcatttcttgaaaccaatttgaagtaggaacaactcaatcctcttgttccatgctctaggtgtttgtttcaagccataaagtgttttatgtaacttgt |
307 |
Q |
| |
|
||||||||||| |||||||||| |||| ||||| ||||||||||||||||||||||||| || ||||||||||||||| || | ||| |||||||||| |
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|
| T |
5242710 |
ttgcatttcttaaaaccaatttaaagtgggaactgatcaatcctcttgttccatgctctagatgcttgtttcaagccatagagagctttgtgtaacttgt |
5242611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 4 - 326
Target Start/End: Complemental strand, 26076100 - 26075778
Alignment:
| Q |
4 |
cctgcattgctagttttgaattgtaatccaaggaaatatgatagtcttcccaaatcagtcatttcaaattcatactgcatagtgtatttgaacttctcaa |
103 |
Q |
| |
|
||||| ||||||||| |||| | |||||||||||||| |||| |||||||||| ||||||||||||| ||| ||| |||||||| |||||||||||||| |
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|
| T |
26076100 |
cctgctttgctagttgtgaactcaaatccaaggaaataagataatcttcccaaaccagtcatttcaaactcacacttcatagtgtgtttgaacttctcaa |
26076001 |
T |
|
| Q |
104 |
tctcactttgattgctaccagtcaccaataggtcatctacatataagaagatgatagttatgtttgcatcattcattttctgaacatatataccatactt |
203 |
Q |
| |
|
|||||||| |||| || ||||| || | || |||||||||||||||| |||| ||||| |||||| ||||||| | |||||||||||||||| |||| | |
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|
| T |
26076000 |
tctcacttggattacttccagttactagtaagtcatctacatataagcagattatagtaatgttttcatcatttagtttctgaacatatatatcatattc |
26075901 |
T |
|
| Q |
204 |
agccttgcatttcttgaaaccaatttgaagtaggaacaactcaatcctcttgttccatgctctaggtgtttgtttcaagccataaagtgttttatgtaac |
303 |
Q |
| |
|
| |||||||| |||| |||||||||||||||||| | ||||||||| |||||||||||||||| || |||||||||||| || | ||| |||||| |
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|
| T |
26075900 |
tactttgcattttctgaatccaatttgaagtaggaactgattaatcctcttattccatgctctaggtgcttatttcaagccatagagggctttgtgtaac |
26075801 |
T |
|
| Q |
304 |
ttgtccatcaaatgctccttccc |
326 |
Q |
| |
|
|||| || || |||||||||||| |
|
|
| T |
26075800 |
ttgtacaccatatgctccttccc |
26075778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 4 - 323
Target Start/End: Original strand, 4958839 - 4959158
Alignment:
| Q |
4 |
cctgcattgctagttttgaattgtaatccaaggaaatatgatagtcttcccaaatcagtcatttcaaattcatactgcatagtgtatttgaacttctcaa |
103 |
Q |
| |
|
||||| ||||||||| |||| | |||||||||||| | |||| ||||||||||||| |||||||||| ||| ||| |||||||| |||||||||||||| |
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|
| T |
4958839 |
cctgctttgctagttgtgaactcaaatccaaggaaagaagataatcttcccaaatcaatcatttcaaactcacacttcatagtgtgtttgaacttctcaa |
4958938 |
T |
|
| Q |
104 |
tctcactttgattgctaccagtcaccaataggtcatctacatataagaagatgatagttatgtttgcatcattcattttctgaacatatataccatactt |
203 |
Q |
| |
|
|||||||| |||| || | ||| || | || |||||||||| ||||| |||| ||||| | |||| ||||||| | ||||| |||||||||||||| | |
|
|
| T |
4958939 |
tctcacttggattacttctagttactagtaagtcatctacaaataagcagattatagtaacgttttcatcatttaggttctggacatatataccatattc |
4959038 |
T |
|
| Q |
204 |
agccttgcatttcttgaaaccaatttgaagtaggaacaactcaatcctcttgttccatgctctaggtgtttgtttcaagccataaagtgttttatgtaac |
303 |
Q |
| |
|
|| |||||||| ||||| |||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||| || | ||| |||||| |
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|
| T |
4959039 |
tgctttgcattttttgaatccaatttgaagtaggaactgatcaatcctcttattccatgctctaggtacttgtttcaagccatagagggctttgtgtaac |
4959138 |
T |
|
| Q |
304 |
ttgtccatcaaatgctcctt |
323 |
Q |
| |
|
|||| || || ||||||||| |
|
|
| T |
4959139 |
ttgtacaccatatgctcctt |
4959158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 4 - 326
Target Start/End: Complemental strand, 12368457 - 12368133
Alignment:
| Q |
4 |
cctgcattgctagttttgaattgtaatccaaggaaatatgatagtcttcccaaatcagtcatttcaaattcatactgcatagtgtatttgaacttctcaa |
103 |
Q |
| |
|
||||| ||||||||| |||| | |||||||||||||| |||| |||||||||||||||||||||||| ||| ||| |||||||| |||||||||||||| |
|
|
| T |
12368457 |
cctgctttgctagttgtgaactcaaatccaaggaaataggataatcttcccaaatcagtcatttcaaactcacacttcatagtgtgtttgaacttctcaa |
12368358 |
T |
|
| Q |
104 |
tctcactttgattgctaccagtcaccaataggtcatctacatataagaagatgatagttatgtttgcatcattcattttctgaacatatatac--catac |
201 |
Q |
| |
|
||||| || |||| || ||||| || | || ||||| |||||||||| |||| ||||| |||||| ||||||||| |||||||||||||||| |||| |
|
|
| T |
12368357 |
tctcagttggattacttccagttactagtaagtcatttacatataagcagattatagtaatgttttcatcattcagtttctgaacatatatatatcatat |
12368258 |
T |
|
| Q |
202 |
ttagccttgcatttcttgaaaccaatttgaagtaggaacaactcaatcctcttgttccatgctctaggtgtttgtttcaagccataaagtgttttatgta |
301 |
Q |
| |
|
| | |||||||| |||| ||| |||||| |||||| ||||||||||| |||||| || |||||||||||||||||||||| || | ||| |||| |
|
|
| T |
12368257 |
tctactttgcattttctgaatccattttgaattaggaagtgatcaatcctcttattccattctataggtgtttgtttcaagccatagagggctttttgta |
12368158 |
T |
|
| Q |
302 |
acttgtccatcaaatgctccttccc |
326 |
Q |
| |
|
|||||| || || |||||||||||| |
|
|
| T |
12368157 |
acttgtacaccatatgctccttccc |
12368133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 1182622 - 1182509
Alignment:
| Q |
36 |
gaaatatgatagtcttcccaaatcagtcatttcaaattcatactgcatagtgtatttgaacttctcaatctcactttgattgctaccagtcaccaatagg |
135 |
Q |
| |
|
|||||| || ||| |||| ||||||||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
1182622 |
gaaataagagagttttcctaaatcagtcatttcaaattcacactacattgtgtgtttgaacttctcaatctcactttgattacttccagttaccaatagc |
1182523 |
T |
|
| Q |
136 |
tcatctacatataa |
149 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
1182522 |
tcattcacatataa |
1182509 |
T |
|
Back To:
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