View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11293A_low_6 (Length: 510)

Name: NF11293A_low_6
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11293A_low_6
NF11293A_low_6
[»] chr7 (7 HSPs)
chr7 (9-327)||(2787119-2787435)
chr7 (363-490)||(2786983-2787109)
chr7 (360-443)||(38372525-38372608)
chr7 (360-415)||(41677369-41677424)
chr7 (360-414)||(34922927-34922981)
chr7 (363-419)||(12473197-12473253)
chr7 (369-405)||(21249161-21249197)
[»] chr5 (13 HSPs)
chr5 (9-206)||(19578159-19578356)
chr5 (369-445)||(11163314-11163390)
chr5 (363-447)||(26002960-26003044)
chr5 (360-429)||(29922225-29922294)
chr5 (357-437)||(17128251-17128331)
chr5 (365-437)||(27981953-27982025)
chr5 (365-447)||(16721990-16722072)
chr5 (357-435)||(24030190-24030268)
chr5 (363-401)||(36106778-36106816)
chr5 (357-405)||(7984110-7984158)
chr5 (360-429)||(12467245-12467314)
chr5 (360-428)||(1473338-1473406)
chr5 (363-443)||(15413959-15414039)
[»] chr3 (12 HSPs)
chr3 (370-443)||(21296733-21296806)
chr3 (368-447)||(23555447-23555526)
chr3 (359-429)||(24842142-24842212)
chr3 (378-419)||(29830824-29830865)
chr3 (360-443)||(22809229-22809313)
chr3 (375-443)||(50022007-50022075)
chr3 (360-407)||(5129851-5129898)
chr3 (369-444)||(10272088-10272163)
chr3 (365-419)||(28623275-28623329)
chr3 (369-419)||(30499957-30500007)
chr3 (357-403)||(42956212-42956258)
chr3 (385-441)||(47520426-47520482)
[»] chr8 (9 HSPs)
chr8 (361-447)||(13131393-13131479)
chr8 (360-407)||(1089016-1089063)
chr8 (388-447)||(2019713-2019772)
chr8 (369-424)||(11988183-11988238)
chr8 (362-429)||(16972395-16972462)
chr8 (360-442)||(32131408-32131490)
chr8 (357-406)||(13265488-13265537)
chr8 (363-427)||(19327850-19327914)
chr8 (369-445)||(42102072-42102148)
[»] chr4 (15 HSPs)
chr4 (363-445)||(18424316-18424398)
chr4 (363-406)||(46650275-46650318)
chr4 (369-443)||(29877606-29877680)
chr4 (357-438)||(43740108-43740189)
chr4 (365-413)||(22303093-22303141)
chr4 (365-445)||(47202791-47202871)
chr4 (389-445)||(48721942-48721998)
chr4 (360-443)||(23297405-23297488)
chr4 (369-443)||(43415334-43415408)
chr4 (365-419)||(46176019-46176073)
chr4 (360-445)||(948037-948122)
chr4 (378-447)||(10794963-10795032)
chr4 (363-436)||(29996678-29996751)
chr4 (380-441)||(31022371-31022432)
chr4 (361-429)||(8130469-8130537)
[»] chr6 (6 HSPs)
chr6 (365-445)||(32615455-32615535)
chr6 (367-444)||(21871193-21871269)
chr6 (369-429)||(28758366-28758426)
chr6 (369-419)||(4272373-4272423)
chr6 (369-419)||(22816630-22816680)
chr6 (360-445)||(21891374-21891459)
[»] chr2 (5 HSPs)
chr2 (360-437)||(33321439-33321516)
chr2 (360-445)||(4090454-4090539)
chr2 (369-414)||(12683651-12683696)
chr2 (386-443)||(17797329-17797386)
chr2 (363-419)||(34913429-34913485)
[»] chr1 (8 HSPs)
chr1 (378-447)||(16225472-16225541)
chr1 (357-429)||(26435208-26435279)
chr1 (360-443)||(1265729-1265812)
chr1 (369-444)||(35897668-35897743)
chr1 (358-405)||(41003392-41003439)
chr1 (363-444)||(15631870-15631951)
chr1 (360-437)||(35590103-35590180)
chr1 (357-442)||(39941343-39941423)
[»] scaffold0100 (1 HSPs)
scaffold0100 (365-419)||(38493-38547)
[»] scaffold0015 (1 HSPs)
scaffold0015 (380-446)||(48535-48601)


Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 9 - 327
Target Start/End: Complemental strand, 2787435 - 2787119
Alignment:
Q  9 tggtgtttgtggcgatcgctttttcggcttatagggtgagtaattgtttgtttcctggacatgaaagggaaatggatcaagttatggagagttttccatt 108  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2787435 tggtgtttgtggcgatcgctttttcggattatagggtgagtaattgtttgtttcctggacatgaaagggaaatggatcaagttatggagagttttccatt 2787336  T
Q  109 gatggttggaattgtttgtagcggtttgtttcttatttttccaacttcaaggcgtggaattggatgcatgcctgcctaattttttagtatatatgtttga 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||    
T  2787335 gatggttggaattgtttgtagcggtttgtttcttatttttccaacttcaaggcgtggaattggatgcatgtctgcctaattttttagt--atatgtttga 2787238  T
Q  209 tttaatttgtatatttgtttgtacttttcttggtcgattatattatccattgacgtttgtatcaaaataatcaatgtgaagtttatgtgatttaatattt 308  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2787237 tttaatttgtatatttgtttgtacttttcttggtcaattatattatccattgacgtttgtatcaaaataatcaatgtgaagtttatgtaatttaatattt 2787138  T
Q  309 tatgatattttttgtatgc 327  Q
    | |||||||||| ||||||    
T  2787137 tgtgatatttttcgtatgc 2787119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 363 - 490
Target Start/End: Complemental strand, 2787109 - 2786983
Alignment:
Q  363 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggacggttacttatttaca 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  2787109 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtata-tctaaaaaataagtcaattcaaacggacggttacttatttaca 2787011  T
Q  463 aaatggatttgattggaacttgcgtgtt 490  Q
    |||||||||||||||||||||| |||||    
T  2787010 aaatggatttgattggaacttgagtgtt 2786983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 360 - 443
Target Start/End: Complemental strand, 38372608 - 38372525
Alignment:
Q  360 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 443  Q
    |||||||| |||||||| |||||| | | |||||||||||||||||  ||||||| |||| || |||||| ||||||| |||||    
T  38372608 ttgacaaacttatgaataatacataagagcttatttatttgcataagctgttttgcataagctcaaaaataagtcaatccaaac 38372525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 415
Target Start/End: Complemental strand, 41677424 - 41677369
Alignment:
Q  360 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgt 415  Q
    |||||||| |||||||| |||||| |||| ||||||||||||||||  ||||||||    
T  41677424 ttgacaaacttatgaataatacataaaaatttatttatttgcataagttgttttgt 41677369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 414
Target Start/End: Complemental strand, 34922981 - 34922927
Alignment:
Q  360 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttg 414  Q
    |||||||| |||||||| |||||| ||| |||||||||||||||||  |||||||    
T  34922981 ttgacaaacttatgaataatacataaaagcttatttatttgcataagttgttttg 34922927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 419
Target Start/End: Complemental strand, 12473253 - 12473197
Alignment:
Q  363 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 419  Q
    ||||| |||||||| |||||| ||||||||||| |||||||||  ||||||| ||||    
T  12473253 acaaacttatgaataatacataaaaacttatttgtttgcataagttgttttgcataa 12473197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 21249197 - 21249161
Alignment:
Q  369 ttatgaatcatacatgaaaacttatttatttgcataa 405  Q
    |||||||| |||||| |||||||||||||||||||||    
T  21249197 ttatgaataatacataaaaacttatttatttgcataa 21249161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 4e-67; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 19578159 - 19578356
Alignment:
Q  9 tggtgtttgtggcgatcgctttttcggcttatagggtgagtaattgtttgtttcctggacatgaaagggaaatggatcaagttatggagagttttccatt 108  Q
    ||||||||||||| ||||||||||||| ||||||||| | ||||||||| ||||||||||||||||  || |||||||||||||||||||||||||| ||    
T  19578159 tggtgtttgtggctatcgctttttcggattatagggttactaattgtttatttcctggacatgaaaaagagatggatcaagttatggagagttttccttt 19578258  T
Q  109 gatggttggaattgtttgtagcggtttgtttcttatttttccaacttcaaggcgtggaattggatgcatgcctgcctaattttttagtatatatgttt 206  Q
    ||||||||||||  |||||||||||||||| ||||||||||| |||||||||| |||||||||||||||| || |||||||| |||||||||||||||    
T  19578259 gatggttggaataatttgtagcggtttgttccttatttttcctacttcaaggcatggaattggatgcatgtcttcctaatttattagtatatatgttt 19578356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 369 - 445
Target Start/End: Original strand, 11163314 - 11163390
Alignment:
Q  369 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 445  Q
    ||||||||||||||| |||||||||| |||| |||||  ||||||| |||| ||||||||| ||||||| |||||||    
T  11163314 ttatgaatcatacataaaaacttattgatttacataagctgttttgcataagctaaaaaataagtcaatccaaacgg 11163390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 447
Target Start/End: Complemental strand, 26003044 - 26002960
Alignment:
Q  363 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 447  Q
    ||||| |||| ||| |||||| |||||||||||||||||||||| |||||||||||| ||  ||||| ||| ||| |||||||||    
T  26003044 acaaacttataaataatacataaaaacttatttatttgcataaactgttttgtataagctctaaaataagttaatccaaacggac 26002960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 360 - 429
Target Start/End: Original strand, 29922225 - 29922294
Alignment:
Q  360 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 429  Q
    |||||||  |||||||| |||||| |||||||||||||||||||||| ||||||| |||| || ||||||    
T  29922225 ttgacaagcttatgaataatacataaaaacttatttatttgcataaactgttttgcataagctcaaaaat 29922294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 437
Target Start/End: Complemental strand, 17128331 - 17128251
Alignment:
Q  357 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaat 437  Q
    ||||||| || ||||||||| |||||| ||| |||||||||||||||||  ||||||| |||| || |||||| |||||||    
T  17128331 actttgataagtttatgaataatacataaaagcttatttatttgcataagctgttttgcataagctcaaaaataagtcaat 17128251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 437
Target Start/End: Original strand, 27981953 - 27982025
Alignment:
Q  365 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaat 437  Q
    |||||||||||| |||||| |||| |||||||||| ||||| |||||||||||||  | |||||| |||||||    
T  27981953 aaatttatgaataatacataaaaatttatttattttcataagatgttttgtataagttcaaaaataagtcaat 27982025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 447
Target Start/End: Complemental strand, 16722072 - 16721990
Alignment:
Q  365 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 447  Q
    |||||||| ||| |||||| |||||||||||||||||||||| | |||| ||||| ||  ||||| ||  |||||||||||||    
T  16722072 aaatttataaataatacataaaaacttatttatttgcataaattattttctataagctttaaaataagctaattcaaacggac 16721990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 24030268 - 24030190
Alignment:
Q  357 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtca 435  Q
    ||||||||||  |||||||| |||||| ||| |||||||||||| ||||  |||||||||||| || |||||| |||||    
T  24030268 actttgacaagcttatgaataatacataaaagcttatttatttggataagctgttttgtataagcttaaaaataagtca 24030190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 36106778 - 36106816
Alignment:
Q  363 acaaatttatgaatcatacatgaaaacttatttatttgc 401  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  36106778 acaaatttatgaatcatacataaaaacttatttatttgc 36106816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 7984158 - 7984110
Alignment:
Q  357 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataa 405  Q
    ||||||||||| |||||||| |||||| |||||||| ||||||||||||    
T  7984158 actttgacaaacttatgaataatacataaaaacttagttatttgcataa 7984110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 429
Target Start/End: Complemental strand, 12467314 - 12467245
Alignment:
Q  360 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 429  Q
    |||||||  |||||||| |||||| ||| ||||||||||||||||| || ||||| |||| || ||||||    
T  12467314 ttgacaagcttatgaataatacataaaagcttatttatttgcataacattttttgaataaactcaaaaat 12467245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 428
Target Start/End: Complemental strand, 1473406 - 1473338
Alignment:
Q  360 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaa 428  Q
    |||||||  |||||||| |||||| ||| |||||||||||||||||  |||| ||||||| || |||||    
T  1473406 ttgacaagcttatgaataatacataaaagcttatttatttgcataagttgttctgtataagctcaaaaa 1473338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 443
Target Start/End: Complemental strand, 15414039 - 15413959
Alignment:
Q  363 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 443  Q
    ||||| |||| ||| |||||| || ||||||||||||||||||  ||||||| |||| ||  ||||| ||||||| |||||    
T  15414039 acaaacttatcaataatacattaatacttatttatttgcataagctgttttgcataagctctaaaataagtcaatccaaac 15413959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 21296806 - 21296733
Alignment:
Q  370 tatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 443  Q
    ||||||| ||| || |||||||||||||||||||||| ||||||| ||||||| |||||| ||||||| |||||    
T  21296806 tatgaataatagataaaaacttatttatttgcataaattgttttgcataatctcaaaaataagtcaatccaaac 21296733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 447
Target Start/End: Complemental strand, 23555526 - 23555447
Alignment:
Q  368 tttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 447  Q
    |||| |||| |||||| ||| |||||||||||||||||| ||||| |||||| || |||||| || |||| |||||||||    
T  23555526 tttacgaataatacataaaagcttatttatttgcataaactgtttcgtataagctcaaaaataagccaatccaaacggac 23555447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 24842142 - 24842212
Alignment:
Q  359 tttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 429  Q
    ||||||||| |||||||| |||||| |||| ||||||||||||||||  |||||| ||||| || ||||||    
T  24842142 tttgacaaacttatgaataatacataaaaatttatttatttgcataagttgttttttataaccttaaaaat 24842212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 419
Target Start/End: Original strand, 29830824 - 29830865
Alignment:
Q  378 atacatgaaaacttatttatttgcataaaatgttttgtataa 419  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  29830824 atacataaaaacttatttatttgcataaactgttttgtataa 29830865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 443
Target Start/End: Original strand, 22809229 - 22809313
Alignment:
Q  360 ttgacaaatttatgaatcatacatgaaaa-cttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 443  Q
    |||||||  |||||||| ||| || |||| |||||||||||||||||  ||||||| |||| || |||||| |||||||||||||    
T  22809229 ttgacaagcttatgaataatatataaaaagcttatttatttgcataagctgttttgcataacctcaaaaataagtcaattcaaac 22809313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 443
Target Start/End: Original strand, 50022007 - 50022075
Alignment:
Q  375 atcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 443  Q
    ||||||||| ||| |||||||||||||||||| ||||||| |||||||  ||||| || |||| |||||    
T  50022007 atcatacatcaaagcttatttatttgcataaactgttttgcataatctctaaaataagccaatccaaac 50022075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 407
Target Start/End: Original strand, 5129851 - 5129898
Alignment:
Q  360 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaa 407  Q
    |||||||  |||||||| |||||| |||||||||||||||||||||||    
T  5129851 ttgacaagcttatgaataatacattaaaacttatttatttgcataaaa 5129898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 444
Target Start/End: Complemental strand, 10272163 - 10272088
Alignment:
Q  369 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacg 444  Q
    |||||||| |||||| |||  |||||||||||||| |  ||||||| |||| ||||||||| ||||||| ||||||    
T  10272163 ttatgaataatacataaaagtttatttatttgcatgagttgttttgcataagctaaaaaataagtcaatccaaacg 10272088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 419
Target Start/End: Original strand, 28623275 - 28623329
Alignment:
Q  365 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 419  Q
    |||||||| ||| |||||| |||||||||||||||||||||  |||||| |||||    
T  28623275 aaatttataaataatacataaaaacttatttatttgcataagttgttttctataa 28623329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 419
Target Start/End: Complemental strand, 30500007 - 30499957
Alignment:
Q  369 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 419  Q
    |||| ||| |||||| |||| ||||||||||||||||| ||||||||||||    
T  30500007 ttataaataatacataaaaatttatttatttgcataaactgttttgtataa 30499957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 403
Target Start/End: Original strand, 42956212 - 42956258
Alignment:
Q  357 actttgacaaatttatgaatcatacatgaaaacttatttatttgcat 403  Q
    |||| ||||| ||||||||| |||||| |||||||||||||||||||    
T  42956212 acttcgacaagtttatgaataatacataaaaacttatttatttgcat 42956258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 441
Target Start/End: Complemental strand, 47520482 - 47520426
Alignment:
Q  385 aaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaa 441  Q
    ||||||||||||| |||||||| | |||| ||||| || |||||| |||||||||||    
T  47520482 aaaacttatttatatgcataaattattttttataaactcaaaaataagtcaattcaa 47520426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 361 - 447
Target Start/End: Complemental strand, 13131479 - 13131393
Alignment:
Q  361 tgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 447  Q
    ||||||| |||||||| |||||| ||| |||||||||||||||||  ||||||| |||| ||||||||| ||  ||| |||||||||    
T  13131479 tgacaaacttatgaataatacataaaagcttatttatttgcataatttgttttgcataagctaaaaaataagcaaatccaaacggac 13131393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 407
Target Start/End: Complemental strand, 1089063 - 1089016
Alignment:
Q  360 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaa 407  Q
    |||||||  |||||||| |||||| |||||||||||||||||||||||    
T  1089063 ttgacaagcttatgaataatacattaaaacttatttatttgcataaaa 1089016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 447
Target Start/End: Original strand, 2019713 - 2019772
Alignment:
Q  388 acttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 447  Q
    |||||||||||||||||| |||||||| |||| ||  ||||| ||||||| |||||||||    
T  2019713 acttatttatttgcataagatgttttgcataagctctaaaataagtcaatccaaacggac 2019772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 424
Target Start/End: Complemental strand, 11988238 - 11988183
Alignment:
Q  369 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaa 424  Q
    |||| ||| |||||| |||||||||||||||||||||| |||||| ||||| ||||    
T  11988238 ttataaataatacataaaaacttatttatttgcataaattgttttatataagctaa 11988183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 429
Target Start/End: Original strand, 16972395 - 16972462
Alignment:
Q  362 gacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 429  Q
    |||||| |||||||| ||||||  || |||||||||||||| ||| ||||||| |||| |||||||||    
T  16972395 gacaaacttatgaataatacatacaagcttatttatttgcaaaaattgttttgcataagctaaaaaat 16972462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 442
Target Start/End: Complemental strand, 32131490 - 32131408
Alignment:
Q  360 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaa 442  Q
    |||||||| ||| |||| || ||| ||| |||||||||||||||||  ||||||| |||| || |||||| ||||||| ||||    
T  32131490 ttgacaaacttaggaataatgcataaaagcttatttatttgcataagctgttttgcataagctcaaaaataagtcaatccaaa 32131408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 406
Target Start/End: Complemental strand, 13265537 - 13265488
Alignment:
Q  357 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaa 406  Q
    ||||||||||  |||||||| |||||| ||| ||||||||||||||||||    
T  13265537 actttgacaagcttatgaataatacataaaagcttatttatttgcataaa 13265488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 19327914 - 19327850
Alignment:
Q  363 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaa 427  Q
    ||||| |||||||| |||||| |||  ||||||||||||||||  ||||||| |||| |||||||    
T  19327914 acaaacttatgaataatacataaaagtttatttatttgcataagttgttttgcataagctaaaaa 19327850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 445
Target Start/End: Complemental strand, 42102148 - 42102072
Alignment:
Q  369 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 445  Q
    |||| ||| |||||| |||||||||||||||||||||  |||||| ||||| ||  ||||| ||| ||| |||||||    
T  42102148 ttataaataatacataaaaacttatttatttgcataagctgttttatataagctctaaaataagttaatccaaacgg 42102072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 363 - 445
Target Start/End: Original strand, 18424316 - 18424398
Alignment:
Q  363 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 445  Q
    |||| ||||||||| |||||| ||| |||||||||||| ||||| ||||||| |||| || ||||||  ||||||||||||||    
T  18424316 acaagtttatgaataatacataaaagcttatttatttgtataaattgttttgcataagctcaaaaatatgtcaattcaaacgg 18424398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 406
Target Start/End: Complemental strand, 46650318 - 46650275
Alignment:
Q  363 acaaatttatgaatcatacatgaaaacttatttatttgcataaa 406  Q
    |||||||||||||| |||||||||| ||||||||||||||||||    
T  46650318 acaaatttatgaataatacatgaaagcttatttatttgcataaa 46650275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 443
Target Start/End: Complemental strand, 29877680 - 29877606
Alignment:
Q  369 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 443  Q
    |||||||| |||||| ||| |||||||||||||||||| ||||||| |||| || |||||| || |||| |||||    
T  29877680 ttatgaataatacataaaagcttatttatttgcataaattgttttgcataagctcaaaaataagccaatccaaac 29877606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 438
Target Start/End: Original strand, 43740108 - 43740189
Alignment:
Q  357 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaatt 438  Q
    |||| ||||| ||||||||| |||  | ||||||||||||||| |||||| ||||||||||||  | |||||| ||||||||    
T  43740108 acttagacaagtttatgaataatatgtaaaaacttatttattttcataaattgttttgtataaatttaaaaataagtcaatt 43740189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 413
Target Start/End: Complemental strand, 22303141 - 22303093
Alignment:
Q  365 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgtttt 413  Q
    |||||||| ||| |||||| |||||||||||||||||||||| ||||||    
T  22303141 aaatttataaataatacataaaaacttatttatttgcataaactgtttt 22303093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 445
Target Start/End: Complemental strand, 47202871 - 47202791
Alignment:
Q  365 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 445  Q
    |||||||| | | |||||| |||||||||||||||||||||  |||||| ||||| ||| ||||| ||| ||| |||||||    
T  47202871 aaatttataagtaatacataaaaacttatttatttgcataagctgttttatataagctataaaataagttaatccaaacgg 47202791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 445
Target Start/End: Original strand, 48721942 - 48721998
Alignment:
Q  389 cttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 445  Q
    |||||||||||| ||||| | |||| ||||| ||||||||| |||||||||||||||    
T  48721942 cttatttatttgtataaattattttttataagctaaaaaataagtcaattcaaacgg 48721998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 443
Target Start/End: Complemental strand, 23297488 - 23297405
Alignment:
Q  360 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 443  Q
    |||||||| |||||||| |||||| ||| |||||||||||||||||  | ||||| |||| || |||||| || |||| |||||    
T  23297488 ttgacaaacttatgaataatacataaaagcttatttatttgcataagctattttgcataagctcaaaaataagccaatccaaac 23297405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 443
Target Start/End: Original strand, 43415334 - 43415408
Alignment:
Q  369 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 443  Q
    |||||||| |||||| |||||||||||||||||| ||  ||||||   ||| || |||||| |||||||||||||    
T  43415334 ttatgaataatacataaaaacttatttatttgcagaagttgttttacttaagctcaaaaataagtcaattcaaac 43415408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 419
Target Start/End: Original strand, 46176019 - 46176073
Alignment:
Q  365 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 419  Q
    |||||||| ||| |||||| |||||||||||||||||||||  |||||| |||||    
T  46176019 aaatttataaataatacataaaaacttatttatttgcataagctgttttatataa 46176073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 445
Target Start/End: Complemental strand, 948122 - 948037
Alignment:
Q  360 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 445  Q
    |||||||| |||||||| |||||| ||| ||||||||||| |||||  | ||||| |||| ||||||| | ||||| | |||||||    
T  948122 ttgacaaagttatgaataatacataaaagcttatttattttcataagctattttgcataagctaaaaagtaagtcattccaaacgg 948037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 447
Target Start/End: Original strand, 10794963 - 10795032
Alignment:
Q  378 atacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 447  Q
    |||||| ||||||||||||||| || ||  ||||||| |||| ||  ||||| |||||||||||||||||    
T  10794963 atacataaaaacttatttatttacacaagctgttttgcataagctctaaaataagtcaattcaaacggac 10795032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 436
Target Start/End: Original strand, 29996678 - 29996751
Alignment:
Q  363 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaa 436  Q
    ||||| |||||||| ||| || ||| |||||||||||||||||| ||||||| | || || |||||| ||||||    
T  29996678 acaaacttatgaataatatataaaagcttatttatttgcataaattgttttgcaaaaactcaaaaataagtcaa 29996751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 31022432 - 31022371
Alignment:
Q  380 acatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaa 441  Q
    |||| ||||||||||||||||||| | |||||||| |||| || |||||| || ||||||||    
T  31022432 acataaaaacttatttatttgcatgagatgttttgcataagctcaaaaataagacaattcaa 31022371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 429
Target Start/End: Complemental strand, 8130537 - 8130469
Alignment:
Q  361 tgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 429  Q
    ||||||| |||||||| || ||| ||| |||||||||||||||||  ||||||| |||  |||||||||    
T  8130537 tgacaaacttatgaataatgcataaaagcttatttatttgcataagctgttttgcatatgctaaaaaat 8130469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 445
Target Start/End: Original strand, 32615455 - 32615535
Alignment:
Q  365 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 445  Q
    |||||||| ||| |||||| |||||||||||||||||||||  |||||| ||||| ||| ||||| ||| ||| |||||||    
T  32615455 aaatttataaataatacataaaaacttatttatttgcataagctgttttatataagctataaaataagttaatccaaacgg 32615535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 444
Target Start/End: Complemental strand, 21871269 - 21871193
Alignment:
Q  367 atttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacg 444  Q
    |||||||||||| |||| |||||||||||||||| ||||| | ||||  |||| ||||||||| ||||||| ||||||    
T  21871269 atttatgaatca-acataaaaacttatttatttgtataaactatttttcataagctaaaaaataagtcaatccaaacg 21871193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 429
Target Start/End: Original strand, 28758366 - 28758426
Alignment:
Q  369 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 429  Q
    |||||||| |||||| |||| ||||||||||||||||| |||| ||||||  |||||||||    
T  28758366 ttatgaataatacataaaaatttatttatttgcataaactgttctgtatagactaaaaaat 28758426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 419
Target Start/End: Complemental strand, 4272423 - 4272373
Alignment:
Q  369 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 419  Q
    ||||| || |||||| |||| ||||||||||||||||| ||||||||||||    
T  4272423 ttatgtataatacataaaaagttatttatttgcataaattgttttgtataa 4272373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 419
Target Start/End: Original strand, 22816630 - 22816680
Alignment:
Q  369 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 419  Q
    ||||||||  ||||| |||||||||||||||||||||| |||||| |||||    
T  22816630 ttatgaatattacataaaaacttatttatttgcataaattgttttttataa 22816680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 445
Target Start/End: Original strand, 21891374 - 21891459
Alignment:
Q  360 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 445  Q
    |||||||  |||||||| ||| || |||||||||||||||||||||  | || || |||| || |||||||| ||||| |||||||    
T  21891374 ttgacaagcttatgaataatatatcaaaacttatttatttgcataagctattctgcataagctcaaaaattaatcaatccaaacgg 21891459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 360 - 437
Target Start/End: Original strand, 33321439 - 33321516
Alignment:
Q  360 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaat 437  Q
    |||||||  |||||| | |||||| |||||||| ||||||||||||  ||||||| |||| ||||||||| |||||||    
T  33321439 ttgacaagcttatgagtaatacataaaaacttaattatttgcataagttgttttgcataagctaaaaaataagtcaat 33321516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 445
Target Start/End: Complemental strand, 4090539 - 4090454
Alignment:
Q  360 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 445  Q
    |||||||  |||||||| |||||| |||  ||||||||||||||||  ||||||| |||| || |||||| || ||||||| ||||    
T  4090539 ttgacaagattatgaataatacatcaaagtttatttatttgcataagctgttttgcataagctcaaaaataagccaattcagacgg 4090454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 414
Target Start/End: Original strand, 12683651 - 12683696
Alignment:
Q  369 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttg 414  Q
    |||||||| |||||| |||||||||||||||||||||  |||||||    
T  12683651 ttatgaataatacattaaaacttatttatttgcataatctgttttg 12683696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 443
Target Start/End: Original strand, 17797329 - 17797386
Alignment:
Q  386 aaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 443  Q
    ||||||||||||||||||||| ||||||| ||||  |||||||| | ||||| |||||    
T  17797329 aaacttatttatttgcataaactgttttgcataagttaaaaaataaatcaatccaaac 17797386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 419
Target Start/End: Original strand, 34913429 - 34913485
Alignment:
Q  363 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 419  Q
    ||||| |||||||| |||||| ||| |||||||||||||||||  ||||||| ||||    
T  34913429 acaaacttatgaataatacataaaagcttatttatttgcataagctgttttgcataa 34913485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 447
Target Start/End: Complemental strand, 16225541 - 16225472
Alignment:
Q  378 atacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 447  Q
    |||||| ||||||||||||||| |||||| ||||||| |||| ||  ||||| ||||||| |||||||||    
T  16225541 atacataaaaacttatttatttacataaactgttttgcataagctctaaaataagtcaatccaaacggac 16225472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 429
Target Start/End: Original strand, 26435208 - 26435279
Alignment:
Q  357 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 429  Q
    ||||||||||| |||  ||| |||||| |||||||||||||||||||||  |||||||||||| || ||||||    
T  26435208 actttgacaaacttaaaaataatacat-aaaacttatttatttgcataagctgttttgtataagctcaaaaat 26435279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 443
Target Start/End: Original strand, 1265729 - 1265812
Alignment:
Q  360 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 443  Q
    |||||||| |||||||| |||||| ||| ||||| | |||| ||||  ||||||| |||| || |||||| |||||||||||||    
T  1265729 ttgacaaaattatgaataatacataaaatcttatctgtttgtataagttgttttgcataagctcaaaaataagtcaattcaaac 1265812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 444
Target Start/End: Original strand, 35897668 - 35897743
Alignment:
Q  369 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacg 444  Q
    |||||||| ||| || |||||||||||||||||||||  ||||||| |||| || |||||| | ||||| ||||||    
T  35897668 ttatgaataataaataaaaacttatttatttgcataagttgttttgcataaccttaaaaataaatcaatccaaacg 35897743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 405
Target Start/End: Complemental strand, 41003439 - 41003392
Alignment:
Q  358 ctttgacaaatttatgaatcatacatgaaaacttatttatttgcataa 405  Q
    |||||||||| |||| ||| |||||| |||||||||||||||||||||    
T  41003439 ctttgacaaacttataaataatacataaaaacttatttatttgcataa 41003392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 444
Target Start/End: Complemental strand, 15631951 - 15631870
Alignment:
Q  363 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacg 444  Q
    ||||| |||| ||| |||||| |||||||||||||||| ||||  |||||||||||| ||  ||||| | | ||||||||||    
T  15631951 acaaacttataaataatacataaaaacttatttatttgtataagttgttttgtataagctctaaaataaattaattcaaacg 15631870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 437
Target Start/End: Complemental strand, 35590180 - 35590103
Alignment:
Q  360 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaat 437  Q
    |||||||  |||||||  |||||| ||| |||||||||||||||||  ||||||  |||| ||||||||| |||||||    
T  35590180 ttgacaagcttatgaactatacataaaagcttatttatttgcataagttgttttacataagctaaaaaataagtcaat 35590103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 442
Target Start/End: Complemental strand, 39941423 - 39941343
Alignment:
Q  357 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaa 442  Q
    ||||||||||  |||||||| |||||| |||||| ||||||||||     ||||||||| ||| || |||||| ||||||||||||    
T  39941423 actttgacaagcttatgaataatacataaaaactcatttatttgc-----atgttttgtttaagctgaaaaataagtcaattcaaa 39941343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 419
Target Start/End: Original strand, 38493 - 38547
Alignment:
Q  365 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 419  Q
    |||||||| ||| |||||| |||||||||||||||||||||| | |||| |||||    
T  38493 aaatttataaataatacataaaaacttatttatttgcataaactattttatataa 38547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 446
Target Start/End: Complemental strand, 48601 - 48535
Alignment:
Q  380 acatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgga 446  Q
    |||| ||| |||||||||||||||||  | |||||||||| ||||||||| |||||||  |||||||    
T  48601 acataaaagcttatttatttgcataagctattttgtataagctaaaaaataagtcaatcaaaacgga 48535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University