View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_60 (Length: 362)
Name: NF11293A_low_60
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 54429560 - 54429879
Alignment:
| Q |
1 |
gcaatagcacaaccttcagaatctccatcttgcggagaaacatttagcaaacgagctggaacaacatctacgtgttgggttggatgaagccgatttctct |
100 |
Q |
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| T |
54429560 |
gcaatagcagcagcttcagaatctccatcttgcggagaaacatttagcaaacgagctggaacaacatctacgtgttgggttggatgaagccgatttctct |
54429659 |
T |
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| Q |
101 |
tgagaacttttaaggttggggcaatttcttccgatcaccaccaatgactcatgagttatcatataacaatagccgatgtccaattctcttaaatttggac |
200 |
Q |
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| T |
54429660 |
tgagaccttttaaggttggggcaatttcttccgatcaccaccaatgactcctgagttatcatataacaatagccgatgtccaattctcttaaatttggac |
54429759 |
T |
|
| Q |
201 |
atccaaaagcaatcattgagatagacgaatcagtaacgcgaagggagcttctgattgacaatatctcaagatttgaacatctgaaatacagtt-gaatta |
299 |
Q |
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| T |
54429760 |
atccaaaagcaatcattgagatagacgaatcagtaatgcgaagggagcttctgattgacaatatctcaagatttgaacatctgaaatacagttggaatta |
54429859 |
T |
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| Q |
300 |
tgttcaaaccatagaagaag |
319 |
Q |
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| T |
54429860 |
tgttcaaaccatagaagaag |
54429879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 92 - 300
Target Start/End: Complemental strand, 54426505 - 54426298
Alignment:
| Q |
92 |
gatttctcttgagaacttttaaggttggggcaatttcttccgatcaccaccaatgactcatgagttatcatataacaatagccgatgtccaattctctta |
191 |
Q |
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| T |
54426505 |
gatttctcttgagaacttt-aatgttggagcaatttcttccaatcagcaccaacgactcatgagttatctcataacaatagctgatatccaattccctta |
54426407 |
T |
|
| Q |
192 |
aatttggacatccaaaagcaatcattgagatagacgaatcagtaacgcgaagggagcttctgattgacaatatctcaagatttgaacatctgaaatacag |
291 |
Q |
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|||||||||| ||| |||||| | || ||||| ||||||||| ||| || |||||||||||||||| | ||||||||||| ||||||||||| ||| |
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| T |
54426406 |
aatttggacacccagtagcaattttagacatagaatcatcagtaacacgagggcagcttctgattgacaacacctcaagatttggacatctgaaatgcag |
54426307 |
T |
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| Q |
292 |
ttgaattat |
300 |
Q |
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||||||||| |
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| T |
54426306 |
ttgaattat |
54426298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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