View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_65 (Length: 358)
Name: NF11293A_low_65
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_65 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 352
Target Start/End: Original strand, 26817095 - 26817439
Alignment:
| Q |
8 |
ttggtgttccaacagcttttagaagggtgatgatggaagggacataaacagttccccatttagggaccacaatctcaggcaccataacagttgcaggtaa |
107 |
Q |
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| T |
26817095 |
ttggtgttccaacagcttttagaagggtgatgatggaagggacataaacagttccccatttagggaccacaatctcaggcaccataacagttgcaggtaa |
26817194 |
T |
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| Q |
108 |
cagaacgcaatagaacacaaatgtgtgtatgtgcaccacaatcttttgaacaaagaaaaaattgcaaacaatatataacttcttccacaaagacactttc |
207 |
Q |
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| T |
26817195 |
cagaacgcaatagaacacaaatgtgtgtatgtgcaccacaatcttttgaacaaagaaaaaattgcaaacaatatataacttcttccacaaagacactttc |
26817294 |
T |
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| Q |
208 |
tgcaatagacatattaaacaaggacatgcatgaatttagatcataagttaaattataatcaactagtgaattcaacaaggattaaaataattaccttgct |
307 |
Q |
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| T |
26817295 |
tgcaatagacatattaaacaaggacatgcatgaatttagatcataagttaaattataatcgactagtgaattcaacaaggattaaaataattaccttgct |
26817394 |
T |
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| Q |
308 |
tctaagaatctccatagccatttttctaaagagattggctggccc |
352 |
Q |
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| T |
26817395 |
tctaagaatctccatagccatttttctaaagagattggctggccc |
26817439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 8 - 266
Target Start/End: Original strand, 26790385 - 26790643
Alignment:
| Q |
8 |
ttggtgttccaacagcttttagaagggtgatgatggaagggacataaacagttccccatttagggaccacaatctcaggcaccataacagttgcaggtaa |
107 |
Q |
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| T |
26790385 |
ttggtgttccaacagctttaagaagggtgatgatggaagggacataaacagttccccatttagggaccacaacctcaggaaccataacagttgcaggtaa |
26790484 |
T |
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| Q |
108 |
cagaacgcaatagaacacaaatgtgtgtatgtgcaccacaatcttttgaacaaagaaaaaattgcaaacaatatataacttcttccacaaagacactttc |
207 |
Q |
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| T |
26790485 |
caatatgcaatagaacacaaatgtgtgtacgtgcaccacaatctttcgaataaagaaaaaactgtaaacaatatgtagcttcttcaacaaagacactttc |
26790584 |
T |
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| Q |
208 |
tgcaatagacatattaaacaaggacatgcatgaatttagatcataagttaaattataat |
266 |
Q |
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| T |
26790585 |
tgcaatggtaaaattaaacaagcacattgatgaattcatataataaattatattataat |
26790643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 26784017 - 26784234
Alignment:
| Q |
8 |
ttggtgttccaacagcttttagaagggtgatgatggaagggacataaacagttccccatttagggaccacaatctcaggcaccataacagttgcaggtaa |
107 |
Q |
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|||||| | |||| || ||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26784017 |
ttggtgctgcaaccgcgtttaggagggtgatgatggtagggatataaacagttccccatttagggaccacaatctcaggcaccataacagttgcaggtaa |
26784116 |
T |
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| Q |
108 |
cagaacgcaatagaacacaaatgtgtgtatgtgcaccacaatcttttgaacaaagaaaaaattgcaaacaatatataacttcttccacaaagacactttc |
207 |
Q |
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| T |
26784117 |
cacaatgcaatataacacaaatgtgtttatgtgaaccacaatcttccggacaaagaaaaaactgtaaaccatatatgttttcttccacaaagacactttc |
26784216 |
T |
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| Q |
208 |
tgcaatagacatattaaa |
225 |
Q |
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| T |
26784217 |
tgccatagacaaattaaa |
26784234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 26830738 - 26830943
Alignment:
| Q |
8 |
ttggtgttccaacagcttttagaagggtgatgatggaagggacataaacagttccccatttagggaccacaatctcaggcaccataacagttgcaggtaa |
107 |
Q |
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|||| ||||||||||| |||| |||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
26830738 |
ttggagttccaacagcatttaaaagggtgatgatggaagggatataaacagctccccatttagggaccacaacctcaggtaccataacagttgcaggtaa |
26830837 |
T |
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| Q |
108 |
cagaacgcaatagaacacaaatgtgtgtatgtgcaccacaatcttttgaacaaagaaaaaattgcaaacaatatataacttcttccacaaagacactttc |
207 |
Q |
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| T |
26830838 |
cacaatgcaatagaaaacaaatgtgttgatgtgggccacaatcttccgaacaaagaaaaaactgtaaacaacatatatcttcttccacaaagacactttc |
26830937 |
T |
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| Q |
208 |
tgcaat |
213 |
Q |
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| T |
26830938 |
tgcaat |
26830943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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