View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_7 (Length: 506)
Name: NF11293A_low_7
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 21 - 369
Target Start/End: Original strand, 27007013 - 27007363
Alignment:
| Q |
21 |
acatgcaattttcagaatgctgaagatacaatgttaagtaccaggacatgtttttcggtgatatttcgactgaaaaatctgttttgttgagaggggtgtt |
120 |
Q |
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| T |
27007013 |
acatgcaattttcagaatgctgaagatacaattttaagtaccgggacatgtttttcggtgatatttcgactgaaaaatctgttttgttgagaggggtgtc |
27007112 |
T |
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| Q |
121 |
cagttgtcaattcaaggtcgataacttcatagaaaatggtgagactatggtaaataaatatcaagcaattcacgtgctttgttcccattcatcatagtct |
220 |
Q |
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| T |
27007113 |
cagttttcaattcaaggtcgataacttcatagaaaatggtgagactatggtaaataaatatcaagcaattcacgtgctttgttcccattcatcatagtct |
27007212 |
T |
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| Q |
221 |
acaaccaagagtttgaagtggtgccaaacaaaagatattggccgcatatgaaggtgatagattgtgtcaaaaattctaatatgt---gaagattcaatgt |
317 |
Q |
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| T |
27007213 |
acaaggaagagtttgaagtggtgccaaacaaaagatattagccgcatatgaaggtgatagattgtg-ccaaaattctaatatgtgaagaagattcaatgt |
27007311 |
T |
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| Q |
318 |
cattcaaatagtacctagataacaactgaaatggacgttcgggatagtgcac |
369 |
Q |
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| T |
27007312 |
cattcaaatagtacctagataacaactgaaatggacgttcgggatagagcac |
27007363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 382 - 481
Target Start/End: Original strand, 47673678 - 47673777
Alignment:
| Q |
382 |
ttcactggcggtagtgcctaccaggtcaaccgggacacgggttttgagcaaatatatttagnnnnnnnnntagactacggtttctacaatatatcgtatg |
481 |
Q |
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| T |
47673678 |
ttcactggcggtagtgcctaccagatcaaccgtgacacggttttagagcaaatatattcagaccaagaaatagactacggtttctacaatttctcgtatg |
47673777 |
T |
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