View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_72 (Length: 347)
Name: NF11293A_low_72
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_72 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 112 - 316
Target Start/End: Complemental strand, 33923708 - 33923505
Alignment:
| Q |
112 |
gactcatttttatcctggtgaattcgcatggtgaccctcatttttaggataaattatcgtgtcaaacgtggaggaatgatatgagcatgagaataatatg |
211 |
Q |
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| T |
33923708 |
gactcatttttatcctggtgaatccgcatggtgaccctcatttttaggataaattatcgtgtcaaacgtggaggaatgatatgagcatgagaataatatg |
33923609 |
T |
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| Q |
212 |
gagagaaatgtgtgtaagagaggttgtcgttatcacgtagggtcttgagcaagtgtaacaaattgatttccagccctatttgcacagacccgagcaccta |
311 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| |
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| T |
33923608 |
gagagaaatgtgtgtaagagaggatgtcgttatcacgtagggtcttgagcaagtgtaacaaattgatttccag-gatattttcacaaccccgagcaccta |
33923510 |
T |
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| Q |
312 |
tatat |
316 |
Q |
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||||| |
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| T |
33923509 |
tatat |
33923505 |
T |
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