View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11293A_low_74 (Length: 343)
Name: NF11293A_low_74
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_74 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 337
Target Start/End: Complemental strand, 49330867 - 49330543
Alignment:
| Q |
6 |
gaacaatatcaaatggaggaatagatacaaaacaacaaatcaacttattcattgatatcctcctagtcaacacatgtgatgtattaattcccttcttgcg |
105 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||| |||||| |||||| ||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
49330867 |
gaacaatatcacatggaggaatagatacaaaacaacaattcaacttgttcattactatcct---agttaacacatgtgatgtattacttcccttcttgcg |
49330771 |
T |
|
| Q |
106 |
aacggcatagtaacataaaccaaacattataattttcctttgtaatttttcgacattgttttgctaaattcttcaaataaaaaacagcgaaattgttcag |
205 |
Q |
| |
|
|||| |||| ||||||||||| || |||||||||||||||||||| ||||| ||| |||||||||||||| | || ||||||||||||||||||||||| |
|
|
| T |
49330770 |
aacgacatactaacataaacctaagattataattttcctttgtaacttttccacactgttttgctaaattttacatataaaaaacagcgaaattgttcaa |
49330671 |
T |
|
| Q |
206 |
ttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgcttatga |
305 |
Q |
| |
|
|||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||| | ||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
49330670 |
ttgagttgcttatatttcagtttcaccatccaatttgattctcaagtctgtgctacctaccgattcggaaaaaatgtagagcatcacgatttgcttctg- |
49330572 |
T |
|
| Q |
306 |
ttccgctatttcagcttcatcaatttcataga |
337 |
Q |
| |
|
|| |||| |||||||||||||||||||| |
|
|
| T |
49330571 |
---tgccattttagcttcatcaatttcataga |
49330543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 203 - 336
Target Start/End: Original strand, 4660393 - 4660526
Alignment:
| Q |
203 |
cagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgctta |
302 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4660393 |
cagttgagttgcttatattacaacttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgctta |
4660492 |
T |
|
| Q |
303 |
tgattccgctatttcagcttcatcaatttcatag |
336 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
4660493 |
tgattccgctattttagcttcatcaatttcatag |
4660526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 203 - 333
Target Start/End: Original strand, 20558 - 20688
Alignment:
| Q |
203 |
cagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgctta |
302 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||| |||||||||| || |||| |||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
20558 |
cagtggagttgcttatattacaacttccccatccaatttgataatcaagtctgggccacctcctgatttgggaaaaatgtagagcatcccgatttgctta |
20657 |
T |
|
| Q |
303 |
tgattccgctatttcagcttcatcaatttca |
333 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||| |
|
|
| T |
20658 |
tgattccgctattttagctttatcaaattca |
20688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 203 - 283
Target Start/End: Original strand, 7691 - 7771
Alignment:
| Q |
203 |
cagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgta |
283 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
7691 |
cagttgagttgcttatattacaacttccccctccgatttgattatcaagtctgtgctacctcctgattcaggaaaaatgta |
7771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University