View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_78 (Length: 337)
Name: NF11293A_low_78
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_78 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 37 - 337
Target Start/End: Complemental strand, 402069 - 401769
Alignment:
| Q |
37 |
atggtgtgctgggaggccgctaacccaaacaattggtttctgtgtttgaagggtgttggaagaccnnnnnnnnctctctcaattgcttgaagccggctgg |
136 |
Q |
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| T |
402069 |
atggtgtgctgggaggctgctaacccaaacaattggtttctgtgtttgaagggtgttggaagaccaaaaaaaactctctcaattgcttgaagccggctgg |
401970 |
T |
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| Q |
137 |
tttaactgggaataaagtcgagattgtatttatgagatgccagaataaatatttgctggttttcggagatttcattcaacgaaacattataggtctcaat |
236 |
Q |
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| T |
401969 |
tttaactgtggataaaatcgagattgtatttatgagatgccagaataaatatttgctggttttcggagatttcattcaacgaaacattataggtctcaat |
401870 |
T |
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| Q |
237 |
cttcgaaccctttcaggtggaacaaacctctgaagtcttaccaatatagcgcctatggctatgggatgtggctgttgtgctggaatgggagagggctgtg |
336 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
401869 |
cttcgaaccctttcagatggaacaaacctctgaagtcttgccaatatagcgcctatggctatgggatgtggctgttgtgctggaatgggagagggctgtg |
401770 |
T |
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| Q |
337 |
a |
337 |
Q |
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| T |
401769 |
a |
401769 |
T |
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