View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_8 (Length: 500)
Name: NF11293A_low_8
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 69 - 413
Target Start/End: Complemental strand, 2781825 - 2781483
Alignment:
| Q |
69 |
cttcaaaacccagttcgtgattcttgttctaaatcacaaaaatcgaaacttttttcaaaagggtattcagaaattcaatgggttttgcttttcatcacca |
168 |
Q |
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| T |
2781825 |
cttcaaaacccagttcgtgattcttgttctaaatcacaaaaatcgaaacttttttccaaagggtattcagaaattcaatgggttttgcttttcatcacca |
2781726 |
T |
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| Q |
169 |
gcatcgttgttgagctggtgaagggtcattcatggaacataacaaacnnnnnnncattatatgaacagtttggttttattaaggatgtggtccaagggtt |
268 |
Q |
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| T |
2781725 |
gcatcgttgttgagctggtgaagggtcattcatggaacataacaaacaaaaaaacattatatgaacagtttggttttattaaggatgtggtccaagggtt |
2781626 |
T |
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| Q |
269 |
gagattttgacacgtggatatgttgatgagatctatgatgaaagatnnnnnnnnnnctttttcttttatcactcttggtttgcttctaaaagtagtggtg |
368 |
Q |
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| T |
2781625 |
gagattttgacacgtggatatgttgatgagatctatgatgaaagat--aaaaaaaactttttcttttatcactcttggtttggttctaaaagtagtggtg |
2781528 |
T |
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| Q |
369 |
tttaaattttgatattaatgcttcaaaaataaaatatcagtaaaa |
413 |
Q |
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| T |
2781527 |
tttaaattttgatattaatgcttcaaaaataaaatatcagtaaaa |
2781483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 2781887 - 2781852
Alignment:
| Q |
7 |
catcatttactttaggtttagaagcacaaccaccca |
42 |
Q |
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| T |
2781887 |
catcatttactttaggtttagaagcacaaccaccca |
2781852 |
T |
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