View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_83 (Length: 328)
Name: NF11293A_low_83
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_83 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 20 - 328
Target Start/End: Original strand, 27774748 - 27775056
Alignment:
| Q |
20 |
catcattggttgcaggagtagcagtactctcctcagctgagtcgcccaatttcacatcatgtactttctcaggtaagcaaacgggaagggagtcatccct |
119 |
Q |
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| T |
27774748 |
catcattggttgcaggagtagcagtactctcctcagctgagtcgcccaatttcacatcatgtactttctcaggtaagcaaacaggaagggagtcatccct |
27774847 |
T |
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| Q |
120 |
cagcatctgcaatataaaaatcaatgtaaggaaaaatatcttagagtagatgcaaatgttataatttgtagtaaaaaacaacaatagcatgtctgtttga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27774848 |
cagcatctgcaatataaaaatcaatgtaaggaaaaatatcttagagtagatgcaaatgttatcatttgtagtaaaaaacaacaatagcatgtctgtttga |
27774947 |
T |
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| Q |
220 |
tataattgaaaacaaagaagataaacaacagccgtagttatcctggtggttggaaaataaagatgtattctaaatttaacatgtcaaaagataaaaatgt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27774948 |
tataattgaaaacaaagaagataaacaacagccgtagttatcctggtggttggaaaataaagatgtattctaaatttaacatgtcaaaagataaaaatgt |
27775047 |
T |
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| Q |
320 |
aaaagataa |
328 |
Q |
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||||||||| |
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| T |
27775048 |
aaaagataa |
27775056 |
T |
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