View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_87 (Length: 322)
Name: NF11293A_low_87
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_87 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 6 - 306
Target Start/End: Original strand, 37707273 - 37707573
Alignment:
| Q |
6 |
gtagataatactgtgaaatatcttgttggttttcaccagaatcgcagatcatggaaaataacactttgttcaaattctgctaagctacaatgctataatg |
105 |
Q |
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|||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37707273 |
gtagattataccgtgaaatatcttgtgggttttcaccagaatcgcagatcatggaaaataacactttgttcaaattctgctaagctacaatgctataatg |
37707372 |
T |
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| Q |
106 |
gcactagagccactatttaacaaaactatatcaaataacgtatcgcaaaacaataacgatttattcaaattccagtatggcgtacactatagctactatt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
37707373 |
gcactagagccactatttaacaaaactatatcaaataacgtatcgcaaaacaataacgatttattcaaattccagtatggcgtacactagagccgctatt |
37707472 |
T |
|
| Q |
206 |
ttacaacactggtttcctaccaaaagtaaaaacattctactaaagacagtacagagaagcacaacccaaattattcatattaaatcaagaatgcaaaata |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37707473 |
ttacaacactggtttcctaccaaaagtaaaaacattctactaaagacagtacagagaagcacaacccaaattattcatattaaataaagaatgcaaaata |
37707572 |
T |
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| Q |
306 |
a |
306 |
Q |
| |
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| T |
37707573 |
a |
37707573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 21 - 306
Target Start/End: Original strand, 37443068 - 37443353
Alignment:
| Q |
21 |
aaatatcttgttggttttcaccagaatcgcagatcatggaaaataacactttgttcaaattctgctaagctacaatgctataatggcactagagccacta |
120 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | || |||||||||||||| |
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| T |
37443068 |
aaatatcttgttggttttcaccagaatcgcagatcacagaaaataacactttgttcaaattttgctaagctacaatgctacagtgacactagagccacta |
37443167 |
T |
|
| Q |
121 |
tttaacaaaactatatcaaataacgtatcgcaaaacaataacgatttattcaaattccagtatggcgtacactatagctactattttacaacactggttt |
220 |
Q |
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| T |
37443168 |
tttaacaaaactatatcgaataacgtatcgcaaaacaataacgatttattcaaattccagtatggcgtacactatagctgctattttacaacactggttt |
37443267 |
T |
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| Q |
221 |
cctaccaaaagtaaaaacattctactaaagacagtacagagaagcacaacccaaattattcatattaaatcaagaatgcaaaataa |
306 |
Q |
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| T |
37443268 |
cctaccaaaagtaaaaacattctactaaagacagtacagagaagcacaacccaaattattcatattaaatcaagaatgcaaaataa |
37443353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 39647259 - 39647292
Alignment:
| Q |
146 |
tatcgcaaaacaataacgatttattcaaattcca |
179 |
Q |
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| T |
39647259 |
tatcgcagaacaataacgatttattcaaattcca |
39647292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 34925263 - 34925316
Alignment:
| Q |
49 |
gcagatcatggaaaataacactttgttcaaattctgctaagctacaatgctata |
102 |
Q |
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| T |
34925263 |
gcagatcgtggaaaatagcagtttgttcaaattctgctatgctacaatgctata |
34925316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 11501488 - 11501559
Alignment:
| Q |
58 |
ggaaaataacactttgttcaaattctgctaagctacaatgctataatggcactagagccactatttaacaaa |
129 |
Q |
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| T |
11501488 |
ggaaaataacagtttgttcaaattccactatgctagagtgctataatgctactatagccactatttgacaaa |
11501559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 4541645 - 4541583
Alignment:
| Q |
111 |
agagccactatttaacaaaactatatcaaataacgtatcgcaaaacaataacgatttattcaa |
173 |
Q |
| |
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||||||||||||| |||| ||| || |||||| | ||| |||||||||||||||||| ||||| |
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| T |
4541645 |
agagccactatttgacaacactgtaccaaatagcatattgcaaaacaataacgatttgttcaa |
4541583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 10363499 - 10363462
Alignment:
| Q |
45 |
aatcgcagatcatggaaaataacactttgttcaaattc |
82 |
Q |
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| T |
10363499 |
aatcgcagatcatggaaaatagcattttgttcaaattc |
10363462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 21901372 - 21901327
Alignment:
| Q |
58 |
ggaaaataacactttgttcaaattctgctaagctacaatgctataa |
103 |
Q |
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|||||||| ||||||||| ||||||||||| ||||||||| ||||| |
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| T |
21901372 |
ggaaaatagcactttgtttaaattctgctacgctacaatgttataa |
21901327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 38434242 - 38434185
Alignment:
| Q |
45 |
aatcgcagatcatggaaaataacactttgttcaaattctgctaagctacaatgctata |
102 |
Q |
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||||||||| || |||||||| || |||||||||||||||||| | |||| ||||||| |
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| T |
38434242 |
aatcgcagaacacggaaaatagcagtttgttcaaattctgctatgttacagtgctata |
38434185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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