View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_88 (Length: 319)
Name: NF11293A_low_88
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_88 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 6 - 316
Target Start/End: Complemental strand, 4146373 - 4146063
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggcatcaaacttaacn |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4146373 |
aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggcatcaaacttaaca |
4146274 |
T |
|
| Q |
106 |
nnnnnntctatacatcgattcacttctcggaaagtgtgatatatcgtaacatttcctttgctccaacaactatttatatatacacataaagagactaaag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4146273 |
aaaaaatctatacatcgattcacttctcggaaagtgtgatatatcgtaacatttcctttgctccaacaactatttatatatacacataaagagactaaag |
4146174 |
T |
|
| Q |
206 |
ggcttaaggattgaaaatgtaaattttgacattaaagaagcgtgaatgcaagcaatactcgagttgacttctaagttcttttgtttttatttgtacaaga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4146173 |
ggcttaaggattgaaaatgtaaattttgacattaaagaagcgtgaatgcaagcaatactcgagttgacttctaagttcttttgtttttatttgtacaaga |
4146074 |
T |
|
| Q |
306 |
ataatctaccc |
316 |
Q |
| |
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| || |||||| |
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| T |
4146073 |
aaaagctaccc |
4146063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 8018266 - 8018306
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagaaaattcaaaagat |
46 |
Q |
| |
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| T |
8018266 |
aaaagtttcagctgcatcactccgaagaaaattcaaaagat |
8018306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 17654700 - 17654787
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggca |
93 |
Q |
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||||||| ||| ||||| ||||| ||||||||||||| ||| || | || |||| | |||||||||||||||||||| || |||||| |
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| T |
17654700 |
aaaagtttcagatgcatcactccaaagaaaattcaaacgatccgatggagaagactcatgacaaagaaactcaaagtttgatgaggca |
17654787 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 41430382 - 41430474
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggcatcaaa |
98 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| || | ||| |||| |||||||||||||||||||||| || |||||| |||| |
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| T |
41430382 |
aaaagttccagctgcatcactccgaagaaaattcaaaagatccgccaaaggagactcgtgacaaagaaactcaaagtttgatgaggcagcaaa |
41430474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 12734766 - 12734679
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggca |
93 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| ||| | || |||| ||||| |||||||||||||||| || |||||| |
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| T |
12734766 |
aaaagttccagctgcatcactccgaagaagattcaaaagatccgttggaggagactcgtgataaagaaactcaaagtttgatgaggca |
12734679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 30269629 - 30269706
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagtt |
83 |
Q |
| |
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||||||||||||||||| |||||||||||| || |||||||| || | || |||| |||||||||||||||||||||| |
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| T |
30269629 |
aaaagttccagctgcatcactccgaagaaagttgaaaagatttgttggaggagactcgtgacaaagaaactcaaagtt |
30269706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 31525171 - 31525096
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaag |
81 |
Q |
| |
|
||||| ||||||||||| ||| ||||||| ||||||||||| ||| | || |||| |||||||||||||||||||| |
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| T |
31525171 |
aaaagctccagctgcatcactgcgaagaagattcaaaagatccgttggaggagactcgtgacaaagaaactcaaag |
31525096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 44269660 - 44269737
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagtt |
83 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||||||||||| | | || |||| |||||||||||||||||||||| |
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| T |
44269660 |
aaaagttccagctgcatcacttcgaagaagattcaaaagatccactggaggagactcgtgacaaagaaactcaaagtt |
44269737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 11107039 - 11106952
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggca |
93 |
Q |
| |
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|||||||||| || ||| ||||||||||| ||||||||||| ||| | || |||| ||| ||||||||||||| |||| || |||||| |
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| T |
11107039 |
aaaagttccaactacatcactccgaagaagattcaaaagatccgttggaggagactcgtaacaaagaaactcagagtttgatgaggca |
11106952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 42367588 - 42367667
Alignment:
| Q |
18 |
tgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggcatcaa |
97 |
Q |
| |
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||||| ||||| ||||||| | ||||||| |||||||| |||| | ||||||||||||| |||||| || ||| |||||| |
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| T |
42367588 |
tgcatcactccaaagaaaacttaaaagatccgtcgaagaagactcttgacaaagaaacttaaagtttgatgagtcatcaa |
42367667 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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