View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11293A_low_9 (Length: 498)
Name: NF11293A_low_9
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 234 - 492
Target Start/End: Complemental strand, 38095776 - 38095518
Alignment:
| Q |
234 |
atttcctctcattaaattacttattgtttttctcattaannnnnnnacacaggaattatttttctcattattgtaagaaagattaaacgtgttattttga |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38095776 |
atttcctctcattaaattacttattgtttttctcattaatttttttacacaggaattatttttctcattattgtaagaaagattaaacgtgttattttga |
38095677 |
T |
|
| Q |
334 |
aataaagaaattaagttactttgaaggnnnnnnnntcatgtaaaaatgccacccatttaaattgcaagcactaataaatctcatgagaaagtaaatatga |
433 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38095676 |
aataaagaaattaagttactttgaaggaaaaaaattcatgtaaaaatgccacccatttaaattgcaagcactaataaatctcatgagaaagtaaatatga |
38095577 |
T |
|
| Q |
434 |
ttgactaatttacctcaactataatgtttgtagatttgcatggacctttgaacaccaaa |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38095576 |
ttgactaatttacctcaactataatgtttgtagatttgcatggacctttgaacaccaaa |
38095518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 38095976 - 38095942
Alignment:
| Q |
37 |
tcaaacatattcatcttaaaaaatgttttaacacc |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
38095976 |
tcaaacatattcatcttaaaaaatgttttaacacc |
38095942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University