View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_96 (Length: 310)
Name: NF11293A_low_96
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_96 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 22 - 297
Target Start/End: Complemental strand, 36125516 - 36125241
Alignment:
| Q |
22 |
aaaagcttctcatcttttccataatagaatgcaactagagggagtagattaggatgtgtcaaccttccaagccttctcatatgatcatagaactcttttt |
121 |
Q |
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| T |
36125516 |
aaaagcttctcatcttttccataatagaatgcaactagagggagtagattaggatgtgtcaaccttccaagccttctcatatgatcatagaactcttttt |
36125417 |
T |
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| Q |
122 |
tgccaactttgttcatgtgcttaaatcttttcactacaacaactggtcctgtcaataccatagccttgtaagtggatccaaaacttccacttcccaaaac |
221 |
Q |
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| T |
36125416 |
tgccaactttgttcatgtgcttaaatcttttcactacaacaactggtcctgtcaataccatagccttgtaagtggatccaaaacttccacttcccaaaac |
36125317 |
T |
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| Q |
222 |
ctcagctgaggcccttaacaagtcctgcaaatcaaactcaaccctttcgttcgtaacgaagttcaaatcttcatct |
297 |
Q |
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| T |
36125316 |
ctctgctgaggcccttaacaagtcctgcaaatcaaactcaaccctttcgttcgtaacgaagttcaaatcttcatct |
36125241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 42509377 - 42509247
Alignment:
| Q |
25 |
agcttctcatcttttccataatagaatgcaactagagggagtagattaggatgtgtcaaccttccaagccttctcatatgatcatagaactcttttttgc |
124 |
Q |
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| T |
42509377 |
agcttctcttcttttctataatagtaagcaacaagaggaatcaaattaggatggttcaaccttccaatccttctcatatgctcttgaaactcttccttcc |
42509278 |
T |
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| Q |
125 |
caactttgttcatgtgcttaaatcttttcac |
155 |
Q |
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| T |
42509277 |
ctacattgttcatttgcttaaacctcttcac |
42509247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 46 - 236
Target Start/End: Complemental strand, 1255047 - 1254857
Alignment:
| Q |
46 |
tagaatgcaactagagggagtagattaggatgtgtcaaccttccaagccttctcatatgatcatagaactcttttttgccaactttgttcatgtgcttaa |
145 |
Q |
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|||||||||| ||||| |||||||||||||||||||| ||||||||| || |||| || ||| | ||||||| ||| ||||| || ||||||||| ||| |
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| T |
1255047 |
tagaatgcaataagaggaagtagattaggatgtgtcaaacttccaagctttttcatgtgttcaaaaaactcttgtttaccaacattattcatgtgcctaa |
1254948 |
T |
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| Q |
146 |
atcttttcactacaacaactggtcctgtcaataccatagccttgtaagtggatccaaaacttccacttcccaaaacctcagctgaggccct |
236 |
Q |
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| T |
1254947 |
atctcttaaccaccacagttggtccattcaaaactattgccttataagttgatccaaaacttccacttccaagcacttcagctgaagccct |
1254857 |
T |
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