View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11293_high_11 (Length: 219)

Name: NF11293_high_11
Description: NF11293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11293_high_11
NF11293_high_11
[»] chr1 (1 HSPs)
chr1 (17-203)||(36314413-36314602)
[»] chr8 (18 HSPs)
chr8 (31-155)||(19345334-19345458)
chr8 (31-155)||(19503885-19504009)
chr8 (43-155)||(19337681-19337793)
chr8 (56-155)||(19355714-19355813)
chr8 (32-155)||(19468410-19468533)
chr8 (32-155)||(19555331-19555454)
chr8 (44-158)||(19410958-19411072)
chr8 (44-158)||(19457977-19458091)
chr8 (44-158)||(19522987-19523101)
chr8 (32-137)||(19404923-19405028)
chr8 (38-135)||(19376801-19376898)
chr8 (44-155)||(19592308-19592416)
chr8 (44-158)||(19469355-19469466)
chr8 (44-158)||(19540279-19540390)
chr8 (47-129)||(19172660-19172742)
chr8 (44-142)||(19287901-19287999)
chr8 (44-129)||(19390779-19390864)
chr8 (66-113)||(19371145-19371192)
[»] chr6 (1 HSPs)
chr6 (32-128)||(19543241-19543337)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 36314602 - 36314413
Alignment:
Q  17 gaagacaatgctagtggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtaggg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314602 gaagacaatgctagtggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtaggg 36314503  T
Q  117 aacctggtgaggtttttcagaaaaaggtgggaacacc---aagcaaaatggacaatgcatcatcatatgaatggaatgtaatttatggtt 203  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314502 aacctggtgaggtttttcagaaaaaggtgggaacaccaaaaagcaaaatggacaatgcatcatcatatgaatggaatgtaatttatggtt 36314413  T

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Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 31 - 155
Target Start/End: Original strand, 19345334 - 19345458
Alignment:
Q  31 tggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtt 130  Q
    |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||    
T  19345334 tggagatattgggaatgcagatatgtgttatggatataatagcaatggagggtgccaaaaatgggaggaaataccaaattgtagggaaaatggtgaggtt 19345433  T
Q  131 tttcagaaaaaggtgggaacaccaa 155  Q
    |||||||||| ||||||||||||||    
T  19345434 tttcagaaaatggtgggaacaccaa 19345458  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 155
Target Start/End: Complemental strand, 19504009 - 19503885
Alignment:
Q  31 tggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtt 130  Q
    |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||    
T  19504009 tggagagattgggaatgcagatatgtgttatggatataatagcaatggagggtgccaaaaatgggaggaaataccaaattgtagggaaaatggtgaggtt 19503910  T
Q  131 tttcagaaaaaggtgggaacaccaa 155  Q
    ||||||||||  | |||||||||||    
T  19503909 tttcagaaaattgcgggaacaccaa 19503885  T

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Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 43 - 155
Target Start/End: Original strand, 19337681 - 19337793
Alignment:
Q  43 aaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaag 142  Q
    ||||||||| || |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |    
T  19337681 aaatgcagacatgtgttatggatataatagcgatggagggtgccaaaaatgggaggaaataccaaattgtagggaacctggtgaggtttttcggaaaatg 19337780  T
Q  143 gtgggaacaccaa 155  Q
    ||||||| |||||    
T  19337781 gtgggaagaccaa 19337793  T

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Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 19355714 - 19355813
Alignment:
Q  56 tgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaaggtgggaacaccaa 155  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||    
T  19355714 tgttatggatataatagcgatggagggtgccaaaaatgggaggaaataccaaattgtagggaacctggtgaggtttttcggaaaaaggtgggaagaccaa 19355813  T

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Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 155
Target Start/End: Complemental strand, 19468533 - 19468410
Alignment:
Q  32 ggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggttt 131  Q
    ||||| |||| |||||||||||| |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||| |||||||||||  |    
T  19468533 ggagatattgtaaatgcagatatgtgttatggatataatagtgatggaggatgccaaaaatgggaggatataccaacttgtagggcacctggtgaggggt 19468434  T
Q  132 ttcagaaaaaggtgggaacaccaa 155  Q
    |||||||||||| ||||| |||||    
T  19468433 ttcagaaaaaggcgggaagaccaa 19468410  T

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Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 155
Target Start/End: Complemental strand, 19555454 - 19555331
Alignment:
Q  32 ggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggttt 131  Q
    ||||| |||| |||||||||||| |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||| |||||||||||  |    
T  19555454 ggagatattgtaaatgcagatatgtgttatggatataatagtgatggaggatgccaaaaatgggaggatataccaacttgtagggcacctggtgaggggt 19555355  T
Q  132 ttcagaaaaaggtgggaacaccaa 155  Q
    |||||||||||| ||||| |||||    
T  19555354 ttcagaaaaaggcgggaagaccaa 19555331  T

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Target: chr8; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 19410958 - 19411072
Alignment:
Q  44 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 143  Q
    ||||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  19410958 aatgcagatatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaacttgcagggaacctggtgagatgtttcagaaaaagg 19411057  T
Q  144 tgggaacaccaagca 158  Q
     ||||| ||||||||    
T  19411058 cgggaagaccaagca 19411072  T

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Target: chr8; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 19457977 - 19458091
Alignment:
Q  44 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 143  Q
    ||||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  19457977 aatgcagatatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaacttgcagggaacctggtgagatgtttcagaaaaagg 19458076  T
Q  144 tgggaacaccaagca 158  Q
     ||||| ||||||||    
T  19458077 cgggaagaccaagca 19458091  T

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Target: chr8; HSP #9
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 19523101 - 19522987
Alignment:
Q  44 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 143  Q
    ||||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  19523101 aatgcagatatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaacttgcagggaacctggtgagatgtttcagaaaaagg 19523002  T
Q  144 tgggaacaccaagca 158  Q
     ||||| ||||||||    
T  19523001 cgggaagaccaagca 19522987  T

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Target: chr8; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 19404923 - 19405028
Alignment:
Q  32 ggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggttt 131  Q
    ||||| ||||||||||||||||| |||||||||||||||||  | |||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  19404923 ggagatattggaaatgcagatatgtgttatggatataatagggacggagggtgccaaaagtgggaggatataccaacttgtagggaacctggtgaggtgt 19405022  T
Q  132 ttcaga 137  Q
    ||||||    
T  19405023 ttcaga 19405028  T

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Target: chr8; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 19376801 - 19376898
Alignment:
Q  38 attggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttca 135  Q
    |||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||    
T  19376801 attggaaatgcagatatatgttatggatataatagtgatcgagggtgccaaaaatgggaggatataccagcttgcagggaacctggtgaggtgtttca 19376898  T

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Target: chr8; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 155
Target Start/End: Original strand, 19592308 - 19592416
Alignment:
Q  44 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 143  Q
    ||||||||||| ||||| ||||||| |    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19592308 aatgcagatatgtgttacggatatagtg---atggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggtttttcagaaaaagg 19592404  T
Q  144 tgggaacaccaa 155  Q
     |||||||||||    
T  19592405 cgggaacaccaa 19592416  T

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Target: chr8; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 19469466 - 19469355
Alignment:
Q  44 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 143  Q
    ||||||||||| ||||| ||||||| |    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  19469466 aatgcagatatgtgttacggatatagtg---atggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggtgtttcagaaaaagg 19469370  T
Q  144 tgggaacaccaagca 158  Q
     ||||| ||||||||    
T  19469369 cgggaagaccaagca 19469355  T

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Target: chr8; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 19540390 - 19540279
Alignment:
Q  44 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 143  Q
    ||||||||||| ||||| ||||||| |    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  19540390 aatgcagatatgtgttacggatatagtg---atggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggtgtttcagaaaaagg 19540294  T
Q  144 tgggaacaccaagca 158  Q
     ||||| ||||||||    
T  19540293 cgggaagaccaagca 19540279  T

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Target: chr8; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 19172742 - 19172660
Alignment:
Q  47 gcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggt 129  Q
    |||||||| |||||||| ||||||| | |||||||||||||||||||||||||||||||||| || |||||||| ||||||||    
T  19172742 gcagatatgtgttatggctataataccgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggt 19172660  T

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Target: chr8; HSP #16
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 44 - 142
Target Start/End: Original strand, 19287901 - 19287999
Alignment:
Q  44 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaag 142  Q
    ||||||||||  ||||||||||||||||   ||| |||||||||||||||||||||||| |||||||| ||||||| ||||||||| ||||| ||||||    
T  19287901 aatgcagataagtgttatggatataataatgatgaagggtgccaaaaatgggaggatatgccaacttgcagggaacgtggtgaggtctttcaaaaaaag 19287999  T

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Target: chr8; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 19390779 - 19390864
Alignment:
Q  44 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggt 129  Q
    ||||||||||  |||||||||||||||||  |||  |||||||||||||||||||||||||||||||| ||||| ||| |||||||    
T  19390779 aatgcagataagtgttatggatataatagtgatgccgggtgccaaaaatgggaggatataccaacttgcagggaccctcgtgaggt 19390864  T

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Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 19371145 - 19371192
Alignment:
Q  66 ataatagcaatggagggtgccaaaaatgggaggatataccaacttgta 113  Q
    ||||||| ||||| || ||||||||||||||| |||||||||||||||    
T  19371145 ataatagtaatggtggatgccaaaaatgggagtatataccaacttgta 19371192  T

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Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 19543241 - 19543337
Alignment:
Q  32 ggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgagg 128  Q
    ||||| ||||||||||||||  | |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19543241 ggagatattggaaatgcagacttgtgttatggatataatatcaacggagggtgccaaaaatgggaggatataccaagttgtagggaacctggtgagg 19543337  T

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