View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293_high_5 (Length: 317)
Name: NF11293_high_5
Description: NF11293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 11505443 - 11505724
Alignment:
| Q |
19 |
tcaacgtctttgttgaaactttctgatcagaatgacgtttgaaagaaactctccggcaaggtgctacatgactccgccatcgtcgttgtcctcgtggaaa |
118 |
Q |
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| T |
11505443 |
tcaacgtctttgttgaaactttctgatcagaatgacgtttgaaagaaactctccggcaaggtgctacatgactccgccatcatcgtcgtcctcgtggaaa |
11505542 |
T |
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| Q |
119 |
tcaagacctgtacgttctcctactgtgccattttctgagagaaagaaatcaccagcagcttctgtgaataaagatgatctttttcatgttattcataagg |
218 |
Q |
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| T |
11505543 |
tcaagacctgtacgttctcctactgtgccattttctgagagaaagaaatcaccagcagcttctgtgagtaaagatgatctttttcatgttattcataagg |
11505642 |
T |
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| Q |
219 |
ttccttctggggattctccttatgttaaagccaaacaggttcaggtaaataaagtttctatttttattgtttttgtattctg |
300 |
Q |
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| T |
11505643 |
ttccttctggggattctccttatgttaaagccaaacaggttcaggtaaataaagtttctatttttattgtttttgtattctg |
11505724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 27 - 268
Target Start/End: Original strand, 11498320 - 11498552
Alignment:
| Q |
27 |
tttgttgaaactttctgatcagaatgacgtttgaaagaaactctccggcaaggtgctacatgactccgccatcgtcgttgtcctcgtggaaatcaagacc |
126 |
Q |
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| T |
11498320 |
tttgttgaaactttctgatcagaatgacgtttgaaagaaactctccggcattgtgctacatgatgccgccgtggtcgt---------ggaaatcaagacc |
11498410 |
T |
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| Q |
127 |
tgtacgttctcctactgtgccattttctgagagaaagaaatcaccagcagcttctgtgaataaagatgatctttttcatgttattcataaggttccttct |
226 |
Q |
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| T |
11498411 |
tatacgttctcctactgtgcctttttcagagagaaagaaatcaccagcagcttcaatgaataaagatgatctttttcatgttattcataaggttccttct |
11498510 |
T |
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| Q |
227 |
ggggattctccttatgttaaagccaaacaggttcaggtaaat |
268 |
Q |
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| T |
11498511 |
ggggattctccttatgttaaggccaaacaggttcaggtaaat |
11498552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 21290209 - 21290132
Alignment:
| Q |
188 |
aaagatgatctttttcatgttattcataaggttccttctggggattctccttatgttaaagccaaacaggttcaggta |
265 |
Q |
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| T |
21290209 |
aaagaagatctctatcatgttattcataaggttccttatggtgatactccttatgtcaaagccaaacatgctcaggta |
21290132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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