View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11293_low_1 (Length: 545)
Name: NF11293_low_1
Description: NF11293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 14 - 533
Target Start/End: Complemental strand, 24291374 - 24290854
Alignment:
| Q |
14 |
cctgtttgtttgatacagattaacaaaacttattagtacgagtttagagccnnnnnnn-tgacttaccacatcttatctttcaaaaaccatagaaggtta |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24291374 |
cctgtttgtttgatacagattaacaaaacttattagtacgagtttagagccaaaaaaaatgacttaccacatcttatctttcaaaaaccatagaaggtta |
24291275 |
T |
|
| Q |
113 |
aagaagtatacctgtctcataattgttgaatatgcattcaacgatccagtgtatcgcctgggcacgcctggaggcaatttcccttccgcttgaagtctaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24291274 |
aagaagtatacctgtctcataattgttgaatatgcattcaacgatccagtgtatcgcctgggcacgcctggaggcaatttcccttccgcttgaagtctaa |
24291175 |
T |
|
| Q |
213 |
ctttgacaagatcagtaggatttgccaccgcaattgccacagcacctgtcgataagacaaattcagagggttcaatatcataattttgcattatatatcg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24291174 |
ctttgacaagatcagtaggatttgccaccgcaattgccacagcacctgtcgataagacaaattcagagggttcaatatcataattttgcattatatatcg |
24291075 |
T |
|
| Q |
313 |
agagttttagaaaaaactgaatgggattaattaccagttgttagtgcagcaagaannnnnnnngtcaacggagcatctccaacatggtctttcccaacat |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24291074 |
agagttttagaaaaaactgaatgggattaattaccagttgttagtgcagcaagaattttttttgtcaacggagcatctccaacatggtctttcccaacat |
24290975 |
T |
|
| Q |
413 |
acaaattcttaacctgttcaattccaaagtaattaacacatcagattgcatatgcaaaaaattagatatgaactcaaacaaatgaacaatctttcagaca |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24290974 |
acaaattcttaacctgttcaattccaaagtaattaacacatcagattgcatatgcaaaaaattagatatgaactcaaagaaatgaacaatctttcagaca |
24290875 |
T |
|
| Q |
513 |
cggttgattactcacaggttc |
533 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
24290874 |
cggttgattactcacaggttc |
24290854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 122 - 261
Target Start/End: Original strand, 5773481 - 5773620
Alignment:
| Q |
122 |
acctgtctcataattgttgaatatgcattcaacgatccagtgtatcgcctgggcacgcctggaggcaatttcccttccgcttgaagtctaactttgacaa |
221 |
Q |
| |
|
|||||||||| |||| ||||| |||||||| ||||||| ||| |||||||| || || ||||| ||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
5773481 |
acctgtctcacgattgacgaataagcattcaaagatccagagtagcgcctgggaacaccaggaggtaattttccttctgcttgaagtcttactttgacaa |
5773580 |
T |
|
| Q |
222 |
gatcagtaggatttgccaccgcaattgccacagcacctgt |
261 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
5773581 |
gatcagttggatttgccaccataattgccacagcacctgt |
5773620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University