View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293_low_2 (Length: 541)
Name: NF11293_low_2
Description: NF11293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 9e-93; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 16909990 - 16910221
Alignment:
| Q |
16 |
caataatgtattaagaaatatggtccgcgtgcaacatgcatgaataattaatatcattttcacggagccacgagaaaaaattattggtttcaatttgacc |
115 |
Q |
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| T |
16909990 |
caataatgtattaagaaatatggtccacgtgcaacatgcatgaataattaatattattttcacggagccacgagaaaaaattattggtttc-atttgacc |
16910088 |
T |
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| Q |
116 |
acgttcattttggttgcaccgtgaatcaaagcattggacacaatataataatatattattggacaaattacacctgagcttgtagatattgggtgctttt |
215 |
Q |
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| T |
16910089 |
acgttcattttggttgcaccgtgaatcaaagcattgaacacgat---ataatatattattggacaaattacacctgagcttgtagatattgggtgctttt |
16910185 |
T |
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| Q |
216 |
nnnnnnntaaagattttgtgttagaaagatctagag |
251 |
Q |
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| T |
16910186 |
aaaaaagtaaagattttgtgttagaaaaatctagag |
16910221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 359 - 530
Target Start/End: Original strand, 16911365 - 16911536
Alignment:
| Q |
359 |
atcatccgtgctttttctctatgaaagtattggacaacggctaaatcattgggtatagttgcttgaataatcatccttgtttgttgcattgggtatcatt |
458 |
Q |
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| T |
16911365 |
atcatccatgctttttctctatcgaagcattggacaatggctaaatcattggatatagttgcttgaataatcatccttgtttgttgcattgggtatcatt |
16911464 |
T |
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| Q |
459 |
tcttttattattgttctcatctttgctcgtcaccattttcagcaaatccgtggtgttatgttcaatattctt |
530 |
Q |
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| T |
16911465 |
tcttttattattgttctcatctttgctcgtcgccattttctgcaaatccattgtgttctgttcaatattctt |
16911536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 359 - 463
Target Start/End: Complemental strand, 34795060 - 34794956
Alignment:
| Q |
359 |
atcatccgtgctttttctctatgaaagtattggacaacggctaaatcattgggtatagttgcttgaataatcatccttgtttgttgcattgggtatcatt |
458 |
Q |
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| T |
34795060 |
atcatccatgcttttcctccatagaagcattggacaacagccaaatcattgggtatagttgcattcatactcatccttgttcgttgcattgggtatcgtt |
34794961 |
T |
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| Q |
459 |
tcttt |
463 |
Q |
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||||| |
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| T |
34794960 |
tcttt |
34794956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 530
Target Start/End: Complemental strand, 34794909 - 34794871
Alignment:
| Q |
492 |
cattttcagcaaatccgtggtgttatgttcaatattctt |
530 |
Q |
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| T |
34794909 |
cattttctgcaaatccgtggtgttctgttcaatattctt |
34794871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 387 - 463
Target Start/End: Complemental strand, 38303369 - 38303293
Alignment:
| Q |
387 |
attggacaacggctaaatcattgggtatagttgcttgaataatcatccttgtttgttgcattgggtatcatttcttt |
463 |
Q |
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| T |
38303369 |
attggacaacagctaaatcattgggtataattgctttcatactcatccttgtctgttgcattatgtatcatttcttt |
38303293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 530
Target Start/End: Original strand, 26154601 - 26154637
Alignment:
| Q |
494 |
ttttcagcaaatccgtggtgttatgttcaatattctt |
530 |
Q |
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| T |
26154601 |
ttttctgcaaatccatggtgttatgttcaatattctt |
26154637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 530
Target Start/End: Original strand, 26167899 - 26167935
Alignment:
| Q |
494 |
ttttcagcaaatccgtggtgttatgttcaatattctt |
530 |
Q |
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| T |
26167899 |
ttttctgcaaatccatggtgttatgttcaatattctt |
26167935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 468
Target Start/End: Original strand, 49677079 - 49677147
Alignment:
| Q |
400 |
taaatcattgggtatagttgcttgaataatcatccttgtttgttgcattgggtatcatttcttttatta |
468 |
Q |
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| T |
49677079 |
taaatcattaggtataattgctttcatacttatcattgttcgttgcattgggtatcgtttctttcatta |
49677147 |
T |
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