View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11293_low_4 (Length: 334)

Name: NF11293_low_4
Description: NF11293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11293_low_4
NF11293_low_4
[»] chr1 (9 HSPs)
chr1 (1-330)||(51376854-51377183)
chr1 (47-93)||(20009870-20009916)
chr1 (47-93)||(24195928-24195974)
chr1 (246-331)||(3967868-3967952)
chr1 (166-241)||(20993654-20993726)
chr1 (168-241)||(52004506-52004576)
chr1 (47-93)||(24766061-24766107)
chr1 (170-229)||(42871981-42872037)
chr1 (174-244)||(52539686-52539753)
[»] chr4 (11 HSPs)
chr4 (170-245)||(11945185-11945257)
chr4 (166-244)||(2469339-2469414)
chr4 (166-241)||(41055147-41055219)
chr4 (166-236)||(7199617-7199684)
chr4 (202-244)||(49812065-49812107)
chr4 (166-241)||(37517128-37517200)
chr4 (166-241)||(37521344-37521416)
chr4 (166-241)||(55682394-55682466)
chr4 (166-244)||(374617-374692)
chr4 (201-245)||(11945095-11945139)
chr4 (201-244)||(48236500-48236543)
[»] chr5 (5 HSPs)
chr5 (166-244)||(17731548-17731623)
chr5 (168-244)||(41992695-41992768)
chr5 (247-331)||(41992791-41992875)
chr5 (246-303)||(34114028-34114085)
chr5 (166-241)||(37369318-37369390)
[»] chr7 (11 HSPs)
chr7 (44-93)||(37068170-37068219)
chr7 (166-241)||(43614147-43614219)
chr7 (166-241)||(46066866-46066938)
chr7 (52-153)||(37068193-37068296)
chr7 (47-93)||(4554282-4554328)
chr7 (166-241)||(11591831-11591903)
chr7 (166-241)||(33516112-33516184)
chr7 (166-236)||(48827191-48827258)
chr7 (166-242)||(37068411-37068484)
chr7 (248-318)||(44274251-44274321)
chr7 (247-297)||(46066789-46066839)
[»] chr3 (5 HSPs)
chr3 (166-241)||(39759741-39759813)
chr3 (166-241)||(43823144-43823216)
chr3 (246-318)||(9688935-9689007)
chr3 (166-244)||(53286065-53286140)
chr3 (247-297)||(39759841-39759891)
[»] chr2 (3 HSPs)
chr2 (166-241)||(33458044-33458116)
chr2 (168-236)||(34478621-34478686)
chr2 (29-92)||(2948497-2948563)
[»] chr8 (4 HSPs)
chr8 (167-241)||(38567725-38567796)
chr8 (47-93)||(43265663-43265709)
chr8 (246-331)||(26278552-26278636)
chr8 (248-318)||(20189739-20189809)
[»] chr6 (3 HSPs)
chr6 (168-230)||(3288181-3288240)
chr6 (166-244)||(11843614-11843689)
chr6 (246-331)||(8365942-8366027)
[»] scaffold0368 (1 HSPs)
scaffold0368 (170-229)||(8551-8607)
[»] scaffold0311 (1 HSPs)
scaffold0311 (270-331)||(1532-1593)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 51377183 - 51376854
Alignment:
Q  1 ggtagtctggtagatgatgaatatgttcatgatctagaattcgttaattgggaggatgaagaaaaagaggatgaaaaggaagagaatgaagaggagcaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51377183 ggtagtctggtagatgatgaatatgttcatgatctagaattcgttaattgggaggatgaagaaaaagaggatgaaaaggaagagaatgaagaggagcaca 51377084  T
Q  101 tgcacaactctagtggtggaggaaagtgatgaagattttcatgattcttgaaccnnnnnnnnnatttaagacttgtggcttttatttcaacttatgaatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||    
T  51377083 tgcacaactctagtggtggaggaaagtgatgaagattttcatgattcttgaacctttttttttatttaagacttgtggcttttatttcaacttatgaatg 51376984  T
Q  201 atacttcatgaattttgagtactgtttaagttatttcagtatttggtattaaatgtattagtgttcgcgccaccgaaatagcgccctctatgcgccctgc 300  Q
    ||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  51376983 atacttcatgaattttgagtaatatttaaggtatttcagtatttggtattaaatgtattagtgttcgcgccaccgaaatagctccctctatgcgccctgc 51376884  T
Q  301 tcctgcgccgcaccaatttttgggatggcc 330  Q
    ||||||||||||||||||||||||||||||    
T  51376883 tcctgcgccgcaccaatttttgggatggcc 51376854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 20009916 - 20009870
Alignment:
Q  47 attgggaggatgaagaaaaagaggatgaaaaggaagagaatgaagag 93  Q
    |||||| |||||||||||||||||||||| ||||||| |||||||||    
T  20009916 attggggggatgaagaaaaagaggatgaagaggaagaaaatgaagag 20009870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 24195928 - 24195974
Alignment:
Q  47 attgggaggatgaagaaaaagaggatgaaaaggaagagaatgaagag 93  Q
    |||||| |||||||||||||||||||||| ||||||| |||||||||    
T  24195928 attggggggatgaagaaaaagaggatgaagaggaagaaaatgaagag 24195974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 331
Target Start/End: Original strand, 3967868 - 3967952
Alignment:
Q  246 gtattaaatgtattagtgttcgcgccaccgaaatagcgccctctatgcgccctgctcctgcgccgcaccaatttttgggatggccg 331  Q
    ||||||||| ||||||||| ||||||||  ||||||||||| ||| ||| ||  ||||  ||||||||||||||||||| ||||||    
T  3967868 gtattaaatatattagtgtccgcgccaca-aaatagcgcccgctacgcgacccactccctcgccgcaccaatttttggggtggccg 3967952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 20993726 - 20993654
Alignment:
Q  166 ttaagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagta 241  Q
    |||||||||||| |||||||||||| | | ||   ||||||||||||||||||||| |||||||| ||||| ||||    
T  20993726 ttaagacttgtgacttttatttcaaataagga---atacttcatgaattttgagtaatgtttaaggtattttagta 20993654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 52004576 - 52004506
Alignment:
Q  168 aagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagta 241  Q
    |||||||||| |||||||||||| ||| ||||   ||||||||||| ||||||| |||||||| ||||| ||||    
T  52004576 aagacttgtgacttttatttcaaattaggaat---acttcatgaatcttgagtaatgtttaaggtattttagta 52004506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 24766061 - 24766107
Alignment:
Q  47 attgggaggatgaagaaaaagaggatgaaaaggaagagaatgaagag 93  Q
    |||||| |||||||||||||||||| ||| ||||||| |||||||||    
T  24766061 attggggggatgaagaaaaagaggaagaagaggaagaaaatgaagag 24766107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 42872037 - 42871981
Alignment:
Q  170 gacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaa 229  Q
    |||||||| |||||||||||| ||| ||||   ||||||||||||||||||| |||||||    
T  42872037 gacttgtgacttttatttcaaattaggaat---acttcatgaattttgagtaatgtttaa 42871981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 52539686 - 52539753
Alignment:
Q  174 tgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagtattt 244  Q
    |||| |||||||||||| ||| ||||   ||||||||||||||||||| ||||||||  |||| |||||||    
T  52539686 tgtgacttttatttcaaattaggaat---acttcatgaattttgagtaatgtttaaggaattttagtattt 52539753  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 11945257 - 11945185
Alignment:
Q  170 gacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagtatttg 245  Q
    ||||||||||||||||||| | ||||||||   ||||||||||||||||||| |||||||| ||||| ||||||||    
T  11945257 gacttgtggcttttatttcgaattatgaat---acttcatgaattttgagtaatgtttaaggtattttagtatttg 11945185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 2469339 - 2469414
Alignment:
Q  166 ttaagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagtattt 244  Q
    |||||||||||| |||||||||||| ||| ||||   ||||||||||||||||||| |||||||| ||||| |||||||    
T  2469339 ttaagacttgtgacttttatttcaaattaggaat---acttcatgaattttgagtaatgtttaagatattttagtattt 2469414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 41055219 - 41055147
Alignment:
Q  166 ttaagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagta 241  Q
    |||||||||||| |||||||||||| ||| ||||   ||||||||||||||||||| |||||||| ||||| ||||    
T  41055219 ttaagacttgtgacttttatttcaaattaggaat---acttcatgaattttgagtaatgtttaaggtattttagta 41055147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 7199617 - 7199684
Alignment:
Q  166 ttaagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttattt 236  Q
    |||||||||||| |||||||||||| ||| ||||   ||||||||||||||||||| |||||||| |||||    
T  7199617 ttaagacttgtgacttttatttcaaattaggaat---acttcatgaattttgagtaatgtttaaggtattt 7199684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 49812065 - 49812107
Alignment:
Q  202 tacttcatgaattttgagtactgtttaagttatttcagtattt 244  Q
    |||||||||||||||||||| |||||||||||||| |||||||    
T  49812065 tacttcatgaattttgagtaatgtttaagttattttagtattt 49812107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 37517200 - 37517128
Alignment:
Q  166 ttaagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagta 241  Q
    |||||||||||| ||||||||| || ||| ||||   ||||||||||||||||||| |||||||| ||||| ||||    
T  37517200 ttaagacttgtgacttttattttaaattaggaat---acttcatgaattttgagtaatgtttaaggtattttagta 37517128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 37521416 - 37521344
Alignment:
Q  166 ttaagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagta 241  Q
    |||||||||||| ||||||||| || ||| ||||   ||||||||||||||||||| |||||||| ||||| ||||    
T  37521416 ttaagacttgtgacttttattttaaattaggaat---acttcatgaattttgagtaatgtttaaggtattttagta 37521344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 55682394 - 55682466
Alignment:
Q  166 ttaagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagta 241  Q
    |||||||||||  |||||||||||| ||| ||||   ||||||||||||||||||| |||||||| ||||| ||||    
T  55682394 ttaagacttgtaacttttatttcaaattaggaat---acttcatgaattttgagtaatgtttaaggtattttagta 55682466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 374692 - 374617
Alignment:
Q  166 ttaagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagtattt 244  Q
    ||||| |||||| |||||||||||| ||| ||||   ||||||||||||||||||| ||||||||  |||| |||||||    
T  374692 ttaaggcttgtgacttttatttcaaattaagaat---acttcatgaattttgagtaatgtttaaggaattttagtattt 374617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 11945139 - 11945095
Alignment:
Q  201 atacttcatgaattttgagtactgtttaagttatttcagtatttg 245  Q
    ||||||||||||||||||||| |||||||| ||||| ||||||||    
T  11945139 atacttcatgaattttgagtaatgtttaaggtattttagtatttg 11945095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 244
Target Start/End: Original strand, 48236500 - 48236543
Alignment:
Q  201 atacttcatgaattttgagtactgtttaagttatttcagtattt 244  Q
    ||||||||||||||||||||| |||||||| ||||| |||||||    
T  48236500 atacttcatgaattttgagtaatgtttaaggtattttagtattt 48236543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 17731548 - 17731623
Alignment:
Q  166 ttaagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagtattt 244  Q
    ||||||||||||| ||||||||||| |||||||||   |||||||| ||||||||| |||||||| ||||| |||||||    
T  17731548 ttaagacttgtggtttttatttcaaattatgaatg---cttcatgacttttgagtaatgtttaagatattttagtattt 17731623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 41992695 - 41992768
Alignment:
Q  168 aagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagtattt 244  Q
    |||||||||| |||||||||||| ||| ||||   ||||||||||||||||||| ||||||||  |||| |||||||    
T  41992695 aagacttgtgacttttatttcaaattaggaat---acttcatgaattttgagtaatgtttaaggaattttagtattt 41992768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 331
Target Start/End: Original strand, 41992791 - 41992875
Alignment:
Q  247 tattaaatgtattagtgttcgcgccaccgaaatagcgccctctatgcgccctgctcctgcgccgcaccaatttttgggatggccg 331  Q
    |||||||| ||||||||| |||| |||||||||||||||| ||| ||||||    || |||||||  ||||||||||| ||||||    
T  41992791 tattaaatatattagtgtccgcgtcaccgaaatagcgcccgctacgcgcccgcaccccgcgccgcgtcaatttttggggtggccg 41992875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 34114028 - 34114085
Alignment:
Q  246 gtattaaatgtattagtgttcgcgccaccgaaatagcgccctctatgcgccctgctcc 303  Q
    ||||||||| ||||||||  | | ||||||||||||||||| ||| ||||||||||||    
T  34114028 gtattaaatttattagtggccacaccaccgaaatagcgcccgctacgcgccctgctcc 34114085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 37369390 - 37369318
Alignment:
Q  166 ttaagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagta 241  Q
    ||||||||||||  ||||||||||| ||| ||||   |||||||||||||| |||| |||||||| ||||| ||||    
T  37369390 ttaagacttgtgaattttatttcaaattaggaat---acttcatgaattttaagtaatgtttaaggtattttagta 37369318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 37068170 - 37068219
Alignment:
Q  44 ttaattgggaggatgaagaaaaagaggatgaaaaggaagagaatgaagag 93  Q
    |||||||||||||||||||||||||||||||| ||||||||  |||||||    
T  37068170 ttaattgggaggatgaagaaaaagaggatgaagaggaagagtttgaagag 37068219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 43614147 - 43614219
Alignment:
Q  166 ttaagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagta 241  Q
    |||||||||||| |||||||||||| ||| ||||   ||||||||||||||||||| |||||||| ||||| ||||    
T  43614147 ttaagacttgtgacttttatttcaaattaggaat---acttcatgaattttgagtaatgtttaaggtattttagta 43614219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 46066938 - 46066866
Alignment:
Q  166 ttaagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagta 241  Q
    |||||||||||| |||||||||||| ||| ||||   ||||||||||||||||||| |||||||| ||||| ||||    
T  46066938 ttaagacttgtgacttttatttcaaattaggaat---acttcatgaattttgagtaatgtttaaggtattttagta 46066866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 37068193 - 37068296
Alignment:
Q  52 gaggatgaagaaaaagaggatgaaaaggaagagaatgaagaggagcacatgcacaactctagtggtggaggaa--agtgatgaagattttcatgattctt 149  Q
    |||||||||||  |||||  |||| || ||||| ||||||| |||||  ||||| ||||||||||||||||||    |||||||||||||||||||| ||    
T  37068193 gaggatgaagaggaagagtttgaagagaaagaggatgaagaagagcatgtgcaccactctagtggtggaggaagcgatgatgaagattttcatgattatt 37068292  T
Q  150 gaac 153  Q
    ||||    
T  37068293 gaac 37068296  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 4554328 - 4554282
Alignment:
Q  47 attgggaggatgaagaaaaagaggatgaaaaggaagagaatgaagag 93  Q
    |||||| |||||||||||||||||||||| ||||||| |||||||||    
T  4554328 attggggggatgaagaaaaagaggatgaagaggaagaaaatgaagag 4554282  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 11591831 - 11591903
Alignment:
Q  166 ttaagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagta 241  Q
    ||||||||| || |||||||||||| ||| ||||   ||||||||||||||||||| |||||||| ||||| ||||    
T  11591831 ttaagacttatgacttttatttcaaattaggaat---acttcatgaattttgagtaatgtttaaggtattttagta 11591903  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 33516184 - 33516112
Alignment:
Q  166 ttaagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagta 241  Q
    |||||||||||| |||||||||||| ||| ||||   ||||||||||||||||||  |||||||| ||||| ||||    
T  33516184 ttaagacttgtgacttttatttcaaattaggaat---acttcatgaattttgagtgatgtttaaggtattttagta 33516112  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 48827191 - 48827258
Alignment:
Q  166 ttaagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttattt 236  Q
    |||||||||||| |||||||||||| ||| ||||   |||| |||||||||||||| |||||||| |||||    
T  48827191 ttaagacttgtgacttttatttcaaattaggaat---acttaatgaattttgagtaatgtttaaggtattt 48827258  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 37068411 - 37068484
Alignment:
Q  166 ttaagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagtat 242  Q
    ||||||||| ||| ||||||||||| ||||||   ||||||||||| |||||| || |||||||| ||||| |||||    
T  37068411 ttaagacttatggtttttatttcaaattatga---atacttcatgatttttgattaatgtttaaggtattttagtat 37068484  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 44274321 - 44274251
Alignment:
Q  248 attaaatgtattagtgttcgcgccaccgaaatagcgccctctatgcgccctgctcctgcgccgcaccaatt 318  Q
    ||||||| ||||||||| ||| ||||||||||||||||  ||| |||||| ||||| || |||| ||||||    
T  44274321 attaaatttattagtgtccgcaccaccgaaatagcgcctgctacgcgccccgctcccgcaccgcgccaatt 44274251  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 46066839 - 46066789
Alignment:
Q  247 tattaaatgtattagtgttcgcgccaccgaaatagcgccctctatgcgccc 297  Q
    |||||||| ||||||||| |||| |||||||||||||||| ||| ||||||    
T  46066839 tattaaatatattagtgtccgcgtcaccgaaatagcgcccgctacgcgccc 46066789  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 39759741 - 39759813
Alignment:
Q  166 ttaagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagta 241  Q
    |||||||||||| |||||||||||| ||| ||||   ||||||||||||||||||| |||||||| ||||| ||||    
T  39759741 ttaagacttgtgacttttatttcaaattaggaat---acttcatgaattttgagtaatgtttaaggtattttagta 39759813  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 43823216 - 43823144
Alignment:
Q  166 ttaagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagta 241  Q
    |||||||||||| |||||||||||| ||| ||||   ||||||||||||||||||| |||||||| ||||| ||||    
T  43823216 ttaagacttgtgacttttatttcaaattaggaat---acttcatgaattttgagtaatgtttaaggtattttagta 43823144  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 9689007 - 9688935
Alignment:
Q  246 gtattaaatgtattagtgttcgcgccaccgaaatagcgccctctatgcgccctgctcctgcgccgcaccaatt 318  Q
    ||||||||| |||||||| |||| ||||| ||||||||||| ||| |||||| |||||||| |||| ||||||    
T  9689007 gtattaaatttattagtggtcgcaccaccaaaatagcgcccgctacgcgccccgctcctgcaccgcgccaatt 9688935  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 53286140 - 53286065
Alignment:
Q  166 ttaagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagtattt 244  Q
    ||||||||||||  ||||||||||| ||| ||||   |||| |||||||||||||| |||||||| ||||| |||||||    
T  53286140 ttaagacttgtgatttttatttcaaattaagaat---acttaatgaattttgagtaatgtttaaggtattttagtattt 53286065  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 297
Target Start/End: Original strand, 39759841 - 39759891
Alignment:
Q  247 tattaaatgtattagtgttcgcgccaccgaaatagcgccctctatgcgccc 297  Q
    |||||||| ||||||||| |||| |||||||||||||||| ||||| ||||    
T  39759841 tattaaatatattagtgtccgcgtcaccgaaatagcgcccgctatgtgccc 39759891  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 33458116 - 33458044
Alignment:
Q  166 ttaagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagta 241  Q
    |||||||||||| |||||||||||| ||| ||||   ||||||||||||||||||| |||||||| ||||| ||||    
T  33458116 ttaagacttgtgacttttatttcaaattaggaat---acttcatgaattttgagtaatgtttaaggtattttagta 33458044  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 34478686 - 34478621
Alignment:
Q  168 aagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttattt 236  Q
    ||||||| || |||||||||||| ||| ||||   ||||||||||||||||||| |||||||| |||||    
T  34478686 aagacttatgacttttatttcaaattaggaat---acttcatgaattttgagtaatgtttaaggtattt 34478621  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 2948497 - 2948563
Alignment:
Q  29 atgatctagaattcgttaat---tgggaggatgaagaaaaagaggatgaaaaggaagagaatgaaga 92  Q
    ||||||||||||| ||||||   |||| |||||||||||||||||||||| ||| ||| | ||||||    
T  2948497 atgatctagaatttgttaatgattggggggatgaagaaaaagaggatgaagagggagatattgaaga 2948563  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 38567725 - 38567796
Alignment:
Q  167 taagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagta 241  Q
    ||||||||||| |||||||||||| ||| ||||   ||||||||||||||||||| |||||||| ||||| ||||    
T  38567725 taagacttgtgacttttatttcaaattaggaat---acttcatgaattttgagtaatgtttaaggtattttagta 38567796  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 43265709 - 43265663
Alignment:
Q  47 attgggaggatgaagaaaaagaggatgaaaaggaagagaatgaagag 93  Q
    |||||| |||||||||||||||||||||| ||||||| |||||||||    
T  43265709 attggggggatgaagaaaaagaggatgaagaggaagaaaatgaagag 43265663  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 331
Target Start/End: Complemental strand, 26278636 - 26278552
Alignment:
Q  246 gtattaaatgtattagtgttcgcgccaccgaaatagcgccctctatgcgccctgctcctgcgccgcaccaatttttgggatggccg 331  Q
    ||||||||| ||||||| |||| | |||  ||||||||||| |||||||||| ||||| ||||| |||||||| ||||| ||||||    
T  26278636 gtattaaatatattagttttcgtgtcaca-aaatagcgcccgctatgcgccccgctcccgcgccacaccaattcttggggtggccg 26278552  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 20189809 - 20189739
Alignment:
Q  248 attaaatgtattagtgttcgcgccaccgaaatagcgccctctatgcgccctgctcctgcgccgcaccaatt 318  Q
    ||||||| ||||||||| ||| ||||||||||||||||  ||| |||||| ||||| || |||| ||||||    
T  20189809 attaaatttattagtgtccgcaccaccgaaatagcgcctgctacgcgccccgctcccgcaccgcgccaatt 20189739  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 3288240 - 3288181
Alignment:
Q  168 aagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaag 230  Q
    |||||||||| |||||||||||| ||| ||||   ||||||||||||||||||| ||||||||    
T  3288240 aagacttgtgacttttatttcaaattaggaat---acttcatgaattttgagtaatgtttaag 3288181  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 11843614 - 11843689
Alignment:
Q  166 ttaagacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaagttatttcagtattt 244  Q
    ||||||||||||  ||||||||||| ||| ||||   |||| |||||||||||||| |||||||| ||||| |||||||    
T  11843614 ttaagacttgtgaattttatttcaaattaagaat---acttaatgaattttgagtaatgtttaaggtattttagtattt 11843689  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 331
Target Start/End: Complemental strand, 8366027 - 8365942
Alignment:
Q  246 gtattaaatgtattagtgttcgcgccaccgaaatagcgccctctatgcgccctgctcctgcgccgcaccaatttttgggatggccg 331  Q
    ||||||||| ||||||||  | | ||||||||||||||||| |||  ||||||||||| || |||| |||||| || || ||||||    
T  8366027 gtattaaatttattagtggccacaccaccgaaatagcgcccgctacacgccctgctcccgcaccgcgccaattattaggttggccg 8365942  T

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Target: scaffold0368 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 8551 - 8607
Alignment:
Q  170 gacttgtggcttttatttcaacttatgaatgatacttcatgaattttgagtactgtttaa 229  Q
    |||||||| |||||||||||| ||| ||||   ||||||||||||||||||| |||||||    
T  8551 gacttgtgacttttatttcaaattaggaat---acttcatgaattttgagtaatgtttaa 8607  T

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Target: scaffold0311 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 1532 - 1593
Alignment:
Q  270 ccaccgaaatagcgccctctatgcgccctgctcctgcgccgcaccaatttttgggatggccg 331  Q
    ||||||||||||||||| |||  | ||| |||||||| ||||||||||| ||||| ||||||    
T  1532 ccaccgaaatagcgcccgctacacaccccgctcctgcaccgcaccaattattgggttggccg 1593  T

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