View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293_low_8 (Length: 238)
Name: NF11293_low_8
Description: NF11293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 41028226 - 41028013
Alignment:
| Q |
1 |
tcaacaaacaagcatcgatcaaagcgtgaatttaatgaagattgactgaatttcctcaatagtgatttcttttgtttcaagtaattggtgttgagggagg |
100 |
Q |
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| T |
41028226 |
tcaacaaacaagcatcgatggaagcgtgaatttaatgaagattgattgaatttcctcaataatgatttcttttgtttca---------tgctgagggagg |
41028136 |
T |
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| Q |
101 |
aacttcgtctctcagttgtgagttccttaacttctccgatagagtggtagttgtggttgttttgagtttttgagctatagcaagaaatgcatacaaggta |
200 |
Q |
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| T |
41028135 |
aacttcgtctctcagttgtgagttccttaacttctccgatagagtggtagttgtggttgttttgagtttttgagctatagcaagaaatgcatacaaggta |
41028036 |
T |
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| Q |
201 |
aagtgataaaaatagcttgtttg |
223 |
Q |
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| T |
41028035 |
aagtgataaaaatagtttgtttg |
41028013 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 21720544 - 21720494
Alignment:
| Q |
86 |
tggtgttgagggaggaacttcgtctctcagttgtgagttccttaacttctc |
136 |
Q |
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| T |
21720544 |
tggtgttgagagaggaattttgtttctcagttgtgagtttcttaacttctc |
21720494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 25592915 - 25592830
Alignment:
| Q |
51 |
tttcctcaatagtgatttcttttgtttcaagtaattggtgttgagggaggaacttcgtctctcagttgtgagttccttaacttctc |
136 |
Q |
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|||||||||| |||||| |||||||||||||| |||| |||||| |||||| ||| |||| |||||| |||| ||||||||| |
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| T |
25592915 |
tttcctcaattgtgattccttttgtttcaagtgattgacaccgagggatgaactttgtccctcacttgtgaattccctaacttctc |
25592830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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