View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293_low_9 (Length: 228)
Name: NF11293_low_9
Description: NF11293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293_low_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 48668774 - 48669001
Alignment:
| Q |
1 |
aacatggatcgatataaatgtccaaatatctttactaattttctaattaagaatacaatagagtaagagtaaggaaagatggaaaaacagatagtatagt |
100 |
Q |
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| T |
48668774 |
aacatggatcgatataaatgtccaaatatctttactaattttctaattaagaatacaatagagtaagagtaaggaaagatggaaaaacagatagtatagt |
48668873 |
T |
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| Q |
101 |
aataaaaagatagcagttccccctcctctatgaactttaatcccatgcacccacttgcattaaatgaagaaattaattccattgaaatttcccaactaca |
200 |
Q |
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| T |
48668874 |
aataaaaagatagcagttccccctcctctatgaactttaatcccatgcacccacttgcattaaatgaagaaattaattccattgaaatttcccaactaca |
48668973 |
T |
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| Q |
201 |
caaacaccaattaggtattagcattaac |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
48668974 |
caaacaccaattaggtattagcattaac |
48669001 |
T |
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