View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11294_high_11 (Length: 407)
Name: NF11294_high_11
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11294_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 8159056 - 8158667
Alignment:
| Q |
1 |
ttcttacccgtgttaacatttgtgataaaatcacccttcttaataacaccctgataaattcttaggtaagttaattttaaatacatcctataccaagtta |
100 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8159056 |
ttcttaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgataaattcttaggtaagttaattttaaatacatcctataccaagtta |
8158957 |
T |
|
| Q |
101 |
cgaaagcctttgcaacaaatggagcatcaatacttccagacaattcaactttctcgccattcctattttgatcaagagcataattactaacatcgattgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8158956 |
cgaaagcctttgcaacaaatggagcatcaatacttccagacaattcaactttctcgccattcctattttgatcaagagcataattactaacatcgattgg |
8158857 |
T |
|
| Q |
201 |
actcggcaaatacctaattacaccctccataaatacttctatccccttatatctctcatcactgatgataattggtacaaatttccttgctatagttgcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8158856 |
actcggcaaatacctaattacaccctccataaatacttctatcccctcatatctctcatcacttatgataattggtacaaatttccttgctatagttgcc |
8158757 |
T |
|
| Q |
301 |
ctccgaattgcatcatcaagataagactctggaatttggctgccaccatgaagagcttcagaaattttatcatcaacctctgatacaatt |
390 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8158756 |
ctccgaattgcatcatccagataagactctggaatttggctgccaccatgaagagcttcagaaattttatcatcaatctctgatacaatt |
8158667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 4084418 - 4084807
Alignment:
| Q |
1 |
ttcttacccgtgttaacatttgtgataaaatcacccttcttaataacaccctgataaattcttaggtaagttaattttaaatacatcctataccaagtta |
100 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| || ||||| |||| | |
|
|
| T |
4084418 |
ttcttaccggtgttaacatttgtaataaaatcacccttcttgataacaccctgatagattcttagataagttaattttaaaaacggcctatgccaatatg |
4084517 |
T |
|
| Q |
101 |
cgaaagcctttgcaacaaatggagcatcaatacttccagacaattcaactttctcgccattcctattttgatcaagagcataattactaacatcgattgg |
200 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4084518 |
tgaaagcctttccaacaaatggtgcatcaatacttccaaacaattcaactttctcaccattcctattttgatcatgagcataattactaacatcgattgg |
4084617 |
T |
|
| Q |
201 |
actcggcaaatacctaattacaccctccataaatacttctatccccttatatctctcatcactgatgataattggtacaaatttccttgctatagttgcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4084618 |
actcggcaaatacctaattacaccctccataaatagttttaacccctcatatctctcatcactgatgataattggtacaaatttccttgctatagttgcc |
4084717 |
T |
|
| Q |
301 |
ctccgaattgcatcatcaagataagactctggaatttggctgccaccatgaagagcttcagaaattttatcatcaacctctgatacaatt |
390 |
Q |
| |
|
|| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4084718 |
ctacgaattgcaccatcgagataagactctggaatttggctgccaccatgaagagcttcataaattttatcatcaacctctgatacaatt |
4084807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 18701908 - 18702297
Alignment:
| Q |
1 |
ttcttacccgtgttaacatttgtgataaaatcacccttcttaataacaccctgataaattcttaggtaagttaattttaaatacatcctataccaagtta |
100 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| || || |||| || |
|
|
| T |
18701908 |
ttcttaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgatagattcttagataagttaatttgaaatacctctcatgccaatttg |
18702007 |
T |
|
| Q |
101 |
cgaaagcctttgcaacaaatggagcatcaatacttccagacaattcaactttctcgccattcctattttgatcaagagcataattactaacatcgattgg |
200 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18702008 |
caaaagcctttgcaacaaatggtgcatcaatacttccagacaattcaactttctcaccattcttatttagatcaagagcataattactaacatcgattgg |
18702107 |
T |
|
| Q |
201 |
actcggcaaatacctaattacaccctccataaatacttctatccccttatatctctcatcactgatgataattggtacaaatttccttgctatagttgcc |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||| || || | || ||| |||||||||| ||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
18702108 |
acttggcaaatacctaattacaccctccattaatagttttaacgtctcatagctctcatcaccaatgataattggtacaaatttcattgatatagttgcc |
18702207 |
T |
|
| Q |
301 |
ctccgaattgcatcatcaagataagactctggaatttggctgccaccatgaagagcttcagaaattttatcatcaacctctgatacaatt |
390 |
Q |
| |
|
|| |||||||||||||| ||| |||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
18702208 |
ctacgaattgcatcatcgagaacagactctggaattttgctgccaccatgaaaagctttagaaagtttatcatcaacctctgacacaatt |
18702297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 43896300 - 43896691
Alignment:
| Q |
1 |
ttcttacccgtgttaacatttgtgataaaatcacccttcttaataacaccctgataaattcttaggtaagttaattttaaatacatcctataccaagtta |
100 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| | | || ||||| | | || |
|
|
| T |
43896300 |
ttcttaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgatagattcttagataagttactaatccatcattcctaatcacatttg |
43896399 |
T |
|
| Q |
101 |
cgaaagcctttgcaacaaatggagcatcaatacttccagacaattcaactttctcgccattcctattttgatcaagagcataattactaacatcgattgg |
200 |
Q |
| |
|
|||| |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43896400 |
tgaaaacctttgcaacaaatggcgcatcaatgcttccagacaattcaactttctcaccattcctattttgatcaagagcataattactaacatcgattgg |
43896499 |
T |
|
| Q |
201 |
actcggcaaatacctaattacaccctccataaatacttctatccccttatatctctcatcactg---------atgataattggtacaaatttccttgct |
291 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| || ||||| ||| | || ||||||||||| | |||| |||||||||||||||| ||| | |
|
|
| T |
43896500 |
acccggcaaatacctaattacaccctccataagtagttctaacccatcatgtctctcatcacagataacacccatgaaaattggtacaaatttcattgat |
43896599 |
T |
|
| Q |
292 |
atagttgccctccgaattgcatcatcaagataagactctggaatttggctgccaccatgaagagcttcagaaattttatcatcaacctctga |
383 |
Q |
| |
|
||||||||||| |||||||||||||| ||| ||| |||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||| |
|
|
| T |
43896600 |
atagttgccctacgaattgcatcatcgagaacagattctgaaatttggctgccaccgtgaaaagcttcagaaagtttatcatcaacctctga |
43896691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 44301646 - 44302050
Alignment:
| Q |
1 |
ttcttacccgtgttaacatttgtgataaaatcacccttcttaataacaccctgataaattcttaggtaagttaattttaaatacatc----ctataccaa |
96 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||| ||| |||| | |||| || |
|
|
| T |
44301646 |
ttctcaccagtgttaacatttgtaataaaatcacccttcttgataacaccctgatagattcttagacaagttaaaag--aatccatcactccaatacaaa |
44301743 |
T |
|
| Q |
97 |
gttacgaaagcctttgcaacaaatggagcatcaatacttccagacaattcaactttctcgccattcctattttgatcaagagcataattactaacatcga |
196 |
Q |
| |
|
|| |||| ||||||| |||||||| ||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44301744 |
tttgtgaaaacctttgctacaaatggcgcatcaacacttccagacaattcaactttctcaccattcttattttgatcaagagcataattactaacatcga |
44301843 |
T |
|
| Q |
197 |
ttggactcggcaaatacctaattacaccctccataaatacttc----tatccccttatatctctcatcactgatgat---------aattggtacaaatt |
283 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| || ||| || ||||| |||||||||| ||||||| || |||||||||||||| |
|
|
| T |
44301844 |
ttggactcggcaaatacctaattacatcctccataagtagttctaattaacccctcatatctctcaccactgataatacccataaaaattggtacaaatt |
44301943 |
T |
|
| Q |
284 |
tccttgctatagttgccctccgaattgcatcatcaagataagactctggaatttggctgccaccatgaagagcttcagaaattttatcatcaacctctga |
383 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||| |||||||||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||| || |
|
|
| T |
44301944 |
tccttgctatggttgccccacgaattgcatcatcgagataagactctagaatttggcttccaccatgaaaagcttcagaaagtttatcatcaacctccga |
44302043 |
T |
|
| Q |
384 |
tacaatt |
390 |
Q |
| |
|
||||||| |
|
|
| T |
44302044 |
tacaatt |
44302050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 44306754 - 44307152
Alignment:
| Q |
1 |
ttcttacccgtgttaacatttgtgataaaatcacccttcttaataacaccctgataaattcttaggtaagttaattttaaatacatcctat-acca--ag |
97 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||| |||||||||||||||||||||| |||||||| ||||||||| || | |||| | | | | |
|
|
| T |
44306754 |
ttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaat---aagtcactcctgttaagattat |
44306850 |
T |
|
| Q |
98 |
ttacgaaagcctttgcaacaaatggagcatcaatacttccagacaattcaactttctcgccattcctattttgatcaagagcataattactaacatcgat |
197 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
44306851 |
ttgtgaaagcctttgcaacaaatggcgcatcaatacttccagacaattcaattttctcaccattcttatttagatcaagagcataattactaacatcgat |
44306950 |
T |
|
| Q |
198 |
tggactcggcaaatacctaattacaccctccataaatacttctatccccttatatctctcatcactg---------atgataattggtacaaatttcctt |
288 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||| || ||||| ||||| |||||||| |||||| |||| ||||||||||||||||| | |
|
|
| T |
44306951 |
tggacttggcaaatacctaattacaccctccctaagtagttctaacccctcgtatctctcgtcactgaaagtacccatgaaaattggtacaaatttccgt |
44307050 |
T |
|
| Q |
289 |
gctatagttgccctccgaattgcatcatcaagataagactctggaatttggctgccaccatgaagagcttcagaaattttatcatcaacctctgatacaa |
388 |
Q |
| |
|
||||| |||||||| |||||||||||||| ||| |||||||| |||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |
|
|
| T |
44307051 |
gctatggttgccctacgaattgcatcatcgagaacagactctgaaatttggctgccaccatgaaaatcttcagaaagtttatcatcaacctctgatacaa |
44307150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44312533 - 44312753
Alignment:
| Q |
1 |
ttcttacccgtgttaacatttgtgataaaatcacccttcttaataacaccctgataaattcttaggtaagttaattttaaatac---atcctataccaag |
97 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||| || ||| ||||||||| | |
|
|
| T |
44312533 |
ttcttaccagtgttaacgtttgtaataaaatcacccttcttaataacaccctgatagattcttagataagttaat---aagtacctaatcctatacatat |
44312629 |
T |
|
| Q |
98 |
ttacgaaagcctttgcaacaaatggagcatcaatacttccagacaattcaactttctcgccattcctattttgatcaagagcataattactaacatcgat |
197 |
Q |
| |
|
|| |||| ||||||| |||||||| |||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44312630 |
ttgtgaaaacctttgctacaaatggctcatcaacacttccagacaattcaactttctcaccattcttattttgatcaagagcataattactaacatcgat |
44312729 |
T |
|
| Q |
198 |
tggactcggcaaatacctaattac |
221 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
44312730 |
tggacttggcaaatacctaattac |
44312753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 216 - 390
Target Start/End: Original strand, 44317160 - 44317334
Alignment:
| Q |
216 |
aattacaccctccataaatacttctatccccttatatctctcatcactgatgataattggtacaaatttccttgctatagttgccctccgaattgcatca |
315 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| || |||||||||||| | ||||||||||||||||||| ||| |||||||||||| |||||||||||| |
|
|
| T |
44317160 |
aattacaccctccataaatagttctaacccctcatttctctcatcactaaagataattggtacaaatttcattgatatagttgccctacgaattgcatca |
44317259 |
T |
|
| Q |
316 |
tcaagataagactctggaatttggctgccaccatgaagagcttcagaaattttatcatcaacctctgatacaatt |
390 |
Q |
| |
|
|| ||| ||||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44317260 |
tcgagaacagactctagaatttggcttccaccatgaaaagcttcagaaagtttatcatcaacctctgatacaatt |
44317334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 35856798 - 35856591
Alignment:
| Q |
1 |
ttcttacccgtgttaacatttgtgataaaatcacccttcttaataacaccctgataaattcttaggtaagttaattttaaatacatcctataccaagtta |
100 |
Q |
| |
|
|||| ||| ||||||||||| || |||||||| || || ||||||| |||||||| |||||||| || |||||||| || |||||||| | | |
|
|
| T |
35856798 |
ttctcaccagtgttaacattagtaataaaatccccttttctaataacgccctgatagattcttagatatgttaatttacaaagcatcctatgc----tcg |
35856703 |
T |
|
| Q |
101 |
cgaaagcctttgcaacaaatggagcatcaatacttccagacaattcaactttctcgccattcctattttgatcaagagcataattactaacatcgattgg |
200 |
Q |
| |
|
||||||| ||| ||||| || |||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| | ||| ||||| |
|
|
| T |
35856702 |
tgaaagccaatgcgacaaacggcccatcaatacttccagacaattctactttctctccattcctagcttgatcaagagcataattactcaaatcaattgg |
35856603 |
T |
|
| Q |
201 |
actcggcaaata |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
35856602 |
actcggcaaata |
35856591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 322
Target Start/End: Complemental strand, 35856531 - 35856474
Alignment:
| Q |
265 |
atgataattggtacaaatttccttgctatagttgccctccgaattgcatcatcaagat |
322 |
Q |
| |
|
|||| |||||||||||||||||||||||| || ||||| ||||||| | ||||||||| |
|
|
| T |
35856531 |
atgaaaattggtacaaatttccttgctattgtagccctacgaattgtaccatcaagat |
35856474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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