View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11294_high_27 (Length: 293)
Name: NF11294_high_27
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11294_high_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 48696468 - 48696742
Alignment:
| Q |
19 |
ctgactacatggagtctgactgcactaaatccaagtccatatgaaaatacactatttacaaccgttggtgtgattggaaggttagaaagcgaactaataa |
118 |
Q |
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| T |
48696468 |
ctgactacatggagtctgactgcactaaatccaagtccatatgaaaatacactatttacaaccgttggtgtgattggaaggttagaaagcgaactaataa |
48696567 |
T |
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| Q |
119 |
aaaagcatcgtgtccgaattttctacaaatacggtgttggacatcgnnnnnnnaagtcaacataacatttctctctggtaaattatacgtcattcttctg |
218 |
Q |
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| T |
48696568 |
aaaagcatcgtgtccgaattttctacaaatacggtgttggacatcgtttttttaagtcaacataacatttctctctggtaaattatacgtcatttttctg |
48696667 |
T |
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| Q |
219 |
atttggtttatgtcagcaatctctttgttttgctaaatgcatgtgttcccctggtttacattttgttgatctgtt |
293 |
Q |
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| T |
48696668 |
atttggtctatgtcagcaatctctttgttttgctaaatgcatgtgttcccctggtttacattttgttgatctgtt |
48696742 |
T |
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