View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11294_high_38 (Length: 239)
Name: NF11294_high_38
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11294_high_38 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2925340 - 2925117
Alignment:
| Q |
1 |
aatatcattatttagaagcttacatttggtgacaaatattcattgcaagacaattccacatttgcgaaatcatcaagttaaaaaggaaacactttaattc |
100 |
Q |
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| T |
2925340 |
aatatcattatttagaagcttacatttggtgacaaatattcattgcaagacaattccacatttgcgaaatcatcaagttaaaaaggaaacactttaattc |
2925241 |
T |
|
| Q |
101 |
caggttcaactttatgccaaaaagcctgttaatacttttcaacatttaagatatgtaataccagcttgtaaatcccttctaagttctaatgaatgaacta |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2925240 |
caggttcaactttatgccaaaaagcctgtttatacttttcaacatttaagatatgtaataccagcttgtaaatcccttctaagttctaatgaatgaacta |
2925141 |
T |
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| Q |
201 |
tgaaaaagatcttcggtccatatt |
224 |
Q |
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||||||||||||||||||||||| |
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| T |
2925140 |
cgaaaaagatcttcggtccatatt |
2925117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 9170007 - 9170086
Alignment:
| Q |
144 |
atttaagatatgtaataccagcttgtaaatcccttctaagttctaatgaatg-aactatgaaaaagatcttcggtccata |
222 |
Q |
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|||| |||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||| || |||||||| |
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| T |
9170007 |
attttagatatgtaatatcagcttgtaaatcccttcaaagttctaatgaatgaaactatgaaaaagacatttggtccata |
9170086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 33538397 - 33538439
Alignment:
| Q |
167 |
tgtaaatcccttctaagttctaatgaatgaactatgaaaaaga |
209 |
Q |
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| T |
33538397 |
tgtaaattccttctaggttctaatgaatgaactatgaataaga |
33538439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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