View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11294_high_4 (Length: 544)
Name: NF11294_high_4
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11294_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 149 - 539
Target Start/End: Original strand, 44798760 - 44799150
Alignment:
| Q |
149 |
cgatggcattgcttttctcatttcatcaaccactgatttctcgtctctctcgaatggttacatgggccttcctcattctgatcaagattcttactttgcg |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44798760 |
cgatggcattgcttttctcatttcatcaaccactgatttctcgtctctctctaatggttacatgggccttcctcattctgatcaagattcttactttgcg |
44798859 |
T |
|
| Q |
249 |
gttgaatttgatacaagttttgatccttctcttggtgacattaatggaaaccacgttggtattgatcttggcagtgttgtttcttttgcttctgctgatc |
348 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44798860 |
gttgaatttgatacgagttttgatccttctcttggtgacattaatggaaaccacgttggtattgatcttggcagtgttgtttcttttgcttctgctgatc |
44798959 |
T |
|
| Q |
349 |
ttctttcacgtcggattgatttgaaaagtgggaaaatcatcaatgcatggattgagtatagagatgatatgaaaatggttcgtgtttgggttagttactc |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44798960 |
ttctttcacgtcggattgatttgaaaagtgggaaaatcatcaatgcatggattgagtatagagatgatatgaaaatggttcgtgtttgggttagttactc |
44799059 |
T |
|
| Q |
449 |
ttcaactagacctccaacaccaattattgcttcattcattgatctttctgagagatttaaagagtttatgcatgttggtttctctgcttct |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44799060 |
ttcaactagacctccaacaccaattattgcttcattcattgatctttctgagagatttaaagagtttatgcatgttggtttctctgcttct |
44799150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 44798632 - 44798698
Alignment:
| Q |
21 |
tctggaattggaagagctttctacctctatcctgttcgttttcttgatcctttaactaactcaaccg |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44798632 |
tctggaattggaagagctttctacctctatcctgttcgttttcttgatcctttaactaactcaaccg |
44798698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University