View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11294_high_43 (Length: 220)
Name: NF11294_high_43
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11294_high_43 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 8089091 - 8088913
Alignment:
| Q |
13 |
acagagcatattaattaaactctcatgaaaaacacttacactataagctgcaaattaagttgatttatcaaacaaggcaacacaaaacataaatataaca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
8089091 |
acagagcatattaattaaactctcatgaaaaacacttacgctataagctgcaaattaagttg-tttatcaaacaaggca----------taaatataaca |
8089003 |
T |
|
| Q |
113 |
gagttatgatttaagagatacctcgcaaatcaagctcaatcacaaaaggttgctcattaagttcaacaaaaacacgtttagcacgtaaac |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8089002 |
gagttatgatttaagagatacctcgcaaatcaagctcaatcacaaaaggttgctcattaagttcaacaaaaacacgtttagcacgtaaac |
8088913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University