View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11294_high_44 (Length: 209)
Name: NF11294_high_44
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11294_high_44 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 2e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 30 - 195
Target Start/End: Original strand, 23152117 - 23152282
Alignment:
| Q |
30 |
gttgttgcttactgttgttgttgtaactgcaaacagagtcaggagtatcagcaaagtgcaaagcagaagaccaaggatagataaatctaacatgatctgc |
129 |
Q |
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| T |
23152117 |
gttgctgcttacttttgttattgtaactgcaaacagagtcaggagtatcagcaaagtgcaaagcagacgaccaaggatagataaacctcacatgatctgc |
23152216 |
T |
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| Q |
130 |
ccatgaacacttgctagataaatcattatttgcagattctggcaacaattttttcacagcctttgc |
195 |
Q |
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| T |
23152217 |
ccatgaacacttgctagataaatcattatttgcagattctggcagcaattttttcacagcctttgc |
23152282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 50 - 192
Target Start/End: Original strand, 23135661 - 23135803
Alignment:
| Q |
50 |
ttgtaactgcaaacagagtcaggagtatcagcaaagtgcaaagcagaagaccaaggatagataaatctaacatgatctgcccatgaacacttgctagata |
149 |
Q |
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| T |
23135661 |
ttgtaagtgcaaacattgtcaggtgtatcagcaaagtgtagaggggaagaccactgaaagataaacctcacatgatctgcccatgaacacttgctagata |
23135760 |
T |
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| Q |
150 |
aatcattatttgcagattctggcaacaattttttcacagcctt |
192 |
Q |
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| T |
23135761 |
aatcattgtttgcagattctggcaacaattttttcacagcctt |
23135803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 102
Target Start/End: Original strand, 49866626 - 49866654
Alignment:
| Q |
74 |
gtatcagcaaagtgcaaagcagaagacca |
102 |
Q |
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| T |
49866626 |
gtatcagcaaagtgcaaagcagaagacca |
49866654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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