View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11294_low_10 (Length: 407)
Name: NF11294_low_10
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11294_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 1754030 - 1753934
Alignment:
| Q |
2 |
gcacagatattgtaacatgtttatttgcaaaagtataaaacaaagtgacagatatttcacaacaaacgaaaaacaattttgttatcaaagaatttga |
98 |
Q |
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| T |
1754030 |
gcacagatattgtaacatgtttatttgcaaaagtataaaacaaagtgacagatatttcacaacaaacgaaaaacaattttgttatcaaagaatttga |
1753934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 283 - 407
Target Start/End: Complemental strand, 1753491 - 1753362
Alignment:
| Q |
283 |
acactaaaaaatgtaataaaaattcacttaattttcattgaatacaaacat----------agttaattttctacatgaatgaaaagaaaagtataatta |
372 |
Q |
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| T |
1753491 |
acactaaaaagtgtaataaaaattcacttaattttcattgaatacaaacatctcaatattcagttaattttctacatggat-----gaaaagtataatta |
1753397 |
T |
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| Q |
373 |
ttctttagagaaatgaagttgcaatgaagataacc |
407 |
Q |
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| T |
1753396 |
atctttagggaaatgaagttgcaatgaagataacc |
1753362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 1753847 - 1753787
Alignment:
| Q |
95 |
ttgaagaaaccatgtctttgctatctaaattcttatccaataattatgtctaaactgaaca |
155 |
Q |
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| T |
1753847 |
ttgaagaaaccatgtttttgctatctaaattcttatccaataattatgtctaaactgaaca |
1753787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 1753763 - 1753710
Alignment:
| Q |
165 |
gacttgtgaagttgtaaatatatgacacttttgatgagaaatgtagaaatatta |
218 |
Q |
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| T |
1753763 |
gacttgtgaagttgtaaatatatgacacttttcatgagaaatgtagaaatatta |
1753710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 247 - 285
Target Start/End: Complemental strand, 1753551 - 1753513
Alignment:
| Q |
247 |
atataagaaatctgtaacaaattcacacatgctcgtaca |
285 |
Q |
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| T |
1753551 |
atataagaaatctgtaacaaattcacacatgctcgtaca |
1753513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 27504164 - 27504217
Alignment:
| Q |
165 |
gacttgtgaagttgtaaatatatgacacttttgatgagaaatgtagaaatatta |
218 |
Q |
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| T |
27504164 |
gacttgtgaagttgtaaatatatgacacttttcatgagaaatggagaaatatta |
27504217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 27478768 - 27478715
Alignment:
| Q |
165 |
gacttgtgaagttgtaaatatatgacacttttgatgagaaatgtagaaatatta |
218 |
Q |
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| T |
27478768 |
gacttgtgaagttgtaaatttatgacacttttcatgagaaatggagaaatatta |
27478715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 27509106 - 27509150
Alignment:
| Q |
174 |
agttgtaaatatatgacacttttgatgagaaatgtagaaatatta |
218 |
Q |
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| T |
27509106 |
agttgtaaatatatgacacttttcatgagaaatggagaaatatta |
27509150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 27475464 - 27475422
Alignment:
| Q |
165 |
gacttgtgaagttgtaaatatatgacacttttgatgagaaatg |
207 |
Q |
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| T |
27475464 |
gacttgtgaagttgtaaatatatgactcttttcatgagaaatg |
27475422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 27522947 - 27522986
Alignment:
| Q |
99 |
agaaaccatgtctttgctatctaaattcttatccaataatt |
139 |
Q |
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| T |
27522947 |
agaaaccatgtttttgctatctaaattc-tatccaataatt |
27522986 |
T |
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