View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11294_low_13 (Length: 398)

Name: NF11294_low_13
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11294_low_13
NF11294_low_13
[»] chr2 (11 HSPs)
chr2 (20-350)||(34220188-34220531)
chr2 (354-398)||(42439966-42440010)
chr2 (354-398)||(2958243-2958287)
chr2 (354-398)||(32127284-32127328)
chr2 (348-398)||(35962689-35962739)
chr2 (354-395)||(17445185-17445226)
chr2 (354-398)||(6403947-6403991)
chr2 (354-398)||(16405580-16405624)
chr2 (354-398)||(18981597-18981640)
chr2 (354-398)||(41251777-41251821)
chr2 (358-394)||(31581769-31581805)
[»] chr3 (8 HSPs)
chr3 (120-279)||(44253879-44254036)
chr3 (289-351)||(44254064-44254126)
chr3 (358-396)||(34084267-34084305)
chr3 (353-398)||(22968587-22968632)
chr3 (354-398)||(39771770-39771814)
chr3 (354-397)||(19390126-19390169)
chr3 (353-398)||(6503712-6503757)
chr3 (358-398)||(22922141-22922181)
[»] chr7 (5 HSPs)
chr7 (354-398)||(5555467-5555511)
chr7 (358-398)||(8394109-8394149)
chr7 (354-398)||(3114239-3114283)
chr7 (358-398)||(36630800-36630840)
chr7 (354-398)||(14777250-14777294)
[»] chr6 (3 HSPs)
chr6 (350-394)||(34948905-34948949)
chr6 (354-397)||(13837801-13837844)
chr6 (354-398)||(398597-398641)
[»] chr4 (9 HSPs)
chr4 (354-398)||(25930688-25930732)
chr4 (358-398)||(36382488-36382528)
chr4 (352-398)||(34407427-34407473)
chr4 (357-398)||(27363344-27363385)
chr4 (354-398)||(13012168-13012212)
chr4 (354-398)||(20129290-20129334)
chr4 (354-398)||(26439422-26439466)
chr4 (354-398)||(47500753-47500797)
chr4 (353-391)||(29319855-29319893)
[»] chr5 (10 HSPs)
chr5 (357-398)||(13817960-13818001)
chr5 (358-398)||(1776519-1776559)
chr5 (354-398)||(39434676-39434720)
chr5 (357-398)||(10033910-10033951)
chr5 (354-398)||(3155774-3155818)
chr5 (354-386)||(16154989-16155021)
chr5 (353-384)||(16334015-16334046)
chr5 (354-396)||(36293766-36293808)
chr5 (357-394)||(14316641-14316678)
chr5 (354-398)||(26283461-26283505)
[»] chr1 (5 HSPs)
chr1 (354-395)||(7433425-7433466)
chr1 (353-398)||(26144234-26144279)
chr1 (361-398)||(32982199-32982236)
chr1 (354-398)||(23313218-23313262)
chr1 (357-398)||(42311084-42311125)
[»] chr8 (3 HSPs)
chr8 (358-398)||(15838270-15838310)
chr8 (357-395)||(29728532-29728570)
chr8 (354-398)||(39914495-39914539)
[»] scaffold0002 (1 HSPs)
scaffold0002 (353-398)||(480600-480645)
[»] scaffold2142 (1 HSPs)
scaffold2142 (354-398)||(502-546)
[»] scaffold0069 (1 HSPs)
scaffold0069 (354-398)||(17822-17866)


Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 350
Target Start/End: Original strand, 34220188 - 34220531
Alignment:
Q  20 gtaggtagctcacccaccatgattccaaagcacttaaatattttggtgcatggcattaaacagtattttttatgaatcagcatatttattaaacaacacg 119  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |    
T  34220188 gtaggtggctcacccaccatgattccaaagcacttaaatattttggtgcatggcattaaacagtatttt-tatgaatcagcatatttattaaacaaccgg 34220286  T
Q  120 tatcatacaagacgtacgataggggacaaagacaaaactgtacaaggggcctgaatttgcggtaaccccaaaaccaaacctaaatctactgtcatgacag 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34220287 tatcatacaagacgtacgataggggacaaagacaaaactgtacaaggggcctgaatttgcggtaaccccaaaaccaaacctaaatctactgtcatgacag 34220386  T
Q  220 cagcactgccgatgccaacacagcaggcagtaaccgcgccagaccccaaactcgcagctgt--------------acaaagcgaaactcccctaatgcaa 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||| ||||    
T  34220387 cagcactgccgatgccaacacagcaggcagtaaccgcgccagaccccaaactcgcagctgtacagcagcacaaaaacaaagcgaaactcccctaacgcaa 34220486  T
Q  306 aagacaatcctttgggttccaactccattcgtataaaagacatgg 350  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  34220487 aagacaatcatttgggttccaactccattcgtataaaagacatgg 34220531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 42439966 - 42440010
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  42439966 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 42440010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 2958287 - 2958243
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  2958287 catgggcggttctaccgtatggcgaccccgggcggtcgtccgggc 2958243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 32127328 - 32127284
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  32127328 catgggcggttctagcgtatggcgaccccgggcggtcgcccgggc 32127284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 348 - 398
Target Start/End: Original strand, 35962689 - 35962739
Alignment:
Q  348 tggaggcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||| |||||||||||||||||||||||||||||| |||||||| ||||||    
T  35962689 tggaagcatgggcggttctaccgtatggcgaccccaggcggtcgtccgggc 35962739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 395
Target Start/End: Complemental strand, 17445226 - 17445185
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccg 395  Q
    |||||||||||||||||| |||||||| ||||||||||||||    
T  17445226 catgggcggttctaccgtgtggcgacctcgggcggtcgcccg 17445185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 6403991 - 6403947
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||| ||||| | ||||||||||||||||||||||||    
T  6403991 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggc 6403947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 16405580 - 16405624
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||    
T  16405580 catgggcggttctaccatatggtgaccctgggcggtcgcccgggc 16405624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 18981597 - 18981640
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  18981597 catgggcggttctaccgtatggcga-cccgggcggtcgtccgggc 18981640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 41251821 - 41251777
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||||||||| | | ||||||||||||||||||||||    
T  41251821 catgggcggttctaccgtgtagtgaccccgggcggtcgcccgggc 41251777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 358 - 394
Target Start/End: Complemental strand, 31581805 - 31581769
Alignment:
Q  358 ggcggttctaccgtatggcgaccccgggcggtcgccc 394  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  31581805 ggcggttctactgtatggcgaccacgggcggtcgccc 31581769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 120 - 279
Target Start/End: Original strand, 44253879 - 44254036
Alignment:
Q  120 tatcatacaagacgtacgataggggacaaagacaaaactgtacaaggggcctgaatttgcggtaaccccaaaaccaaacctaaatctactgtcatgacag 219  Q
    ||||||||||| | | ||||||||||||||||| |||||| |||| ||||| |||||||||||  ||| |||| |||||| ||  |||||||||||||||    
T  44253879 tatcatacaaggcatgcgataggggacaaagacgaaactgaacaaagggcccgaatttgcggt--cccaaaaatcaaaccaaatactactgtcatgacag 44253976  T
Q  220 cagcactgccgatgccaacacagcaggcagtaaccgcgccagaccccaaactcgcagctg 279  Q
    |||||||||||  ||||||| ||||||||||||  |||||||||||||||| ||||||||    
T  44253977 cagcactgccgtagccaacatagcaggcagtaattgcgccagaccccaaacccgcagctg 44254036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 351
Target Start/End: Original strand, 44254064 - 44254126
Alignment:
Q  289 aaactcccctaatgcaaaagacaatcctttgggttccaactccattcgtataaaagacatgga 351  Q
    ||| |||||||| |||||||||||||||| ||||||||||||||||| || ||||||||||||    
T  44254064 aaattcccctaacgcaaaagacaatccttcgggttccaactccattcatagaaaagacatgga 44254126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 358 - 396
Target Start/End: Complemental strand, 34084305 - 34084267
Alignment:
Q  358 ggcggttctaccgtatggcgaccccgggcggtcgcccgg 396  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34084305 ggcggttctaccgtatggcgaccccgggcggtcgcccgg 34084267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 398
Target Start/End: Complemental strand, 22968632 - 22968587
Alignment:
Q  353 gcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    ||||||||||||||||||| | ||||||||||||||||| ||||||    
T  22968632 gcatgggcggttctaccgtgtagcgaccccgggcggtcgtccgggc 22968587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 39771770 - 39771814
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||| ||||| | ||||||||||||||||||||||||    
T  39771770 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggc 39771814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 397
Target Start/End: Original strand, 19390126 - 19390169
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccggg 397  Q
    |||||| ||||||||||| ||||||||||||||||||| |||||    
T  19390126 catgggaggttctaccgtgtggcgaccccgggcggtcgtccggg 19390169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 398
Target Start/End: Complemental strand, 6503757 - 6503712
Alignment:
Q  353 gcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    ||||||||||||  |||||  |||||||||||||||||||||||||    
T  6503757 gcatgggcggtttcaccgtccggcgaccccgggcggtcgcccgggc 6503712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 358 - 398
Target Start/End: Original strand, 22922141 - 22922181
Alignment:
Q  358 ggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||| |||||||||||| ||||||||||||| |||||    
T  22922141 ggcggttccaccgtatggcgatcccgggcggtcgctcgggc 22922181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 5555467 - 5555511
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  5555467 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 5555511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 358 - 398
Target Start/End: Original strand, 8394109 - 8394149
Alignment:
Q  358 ggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8394109 ggcggttctaccgtatggcgaccccgggcggtcgcccgggc 8394149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 3114283 - 3114239
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||||||||||||| |||||||| |||||||||||||    
T  3114283 catgggcggttctaccgtatggtgaccccggacggtcgcccgggc 3114239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 358 - 398
Target Start/End: Original strand, 36630800 - 36630840
Alignment:
Q  358 ggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  36630800 ggcggttctaccgtatggcgaccccggacggtcgcccgggc 36630840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 14777294 - 14777250
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||||||||| | |||| |||||||||||||||||||    
T  14777294 catgggcggttctaccgtgtagcgatcccgggcggtcgcccgggc 14777250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 350 - 394
Target Start/End: Complemental strand, 34948949 - 34948905
Alignment:
Q  350 gaggcatgggcggttctaccgtatggcgaccccgggcggtcgccc 394  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  34948949 gaggcatgggcggttctaccgtatggcgaccccaggcggtcgccc 34948905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 397
Target Start/End: Original strand, 13837801 - 13837844
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccggg 397  Q
    |||||||||||||||||||||||||||||||||| |||| ||||    
T  13837801 catgggcggttctaccgtatggcgaccccgggcgatcgctcggg 13837844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 398597 - 398641
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||| ||||| | ||||||||||||||||||||||||    
T  398597 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggc 398641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 25930688 - 25930732
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  25930688 catgggcggttctaccgtatggcgaccctgggcggtcgcccgggc 25930732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 36382528 - 36382488
Alignment:
Q  358 ggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36382528 ggcggttctaccgtatggcgaccccgggcggtcgcccgggc 36382488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 352 - 398
Target Start/End: Complemental strand, 34407473 - 34407427
Alignment:
Q  352 ggcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||||| ||||| | ||||||||||||||||||||||||    
T  34407473 ggcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggc 34407427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 27363344 - 27363385
Alignment:
Q  357 gggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||| ||||||||||||||| |||||||||||||||||    
T  27363344 gggcggttttaccgtatggcgacctcgggcggtcgcccgggc 27363385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 13012168 - 13012212
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||| ||||| | ||||||||||||||||||||||||    
T  13012168 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggc 13012212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 20129290 - 20129334
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||| ||||| | ||||||||||||||||||||||||    
T  20129290 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggc 20129334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 26439466 - 26439422
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||| ||||| | ||||||||||||||||||||||||    
T  26439466 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggc 26439422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 47500753 - 47500797
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||| ||||| | ||||||||||||||||||||||||    
T  47500753 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggc 47500797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 391
Target Start/End: Complemental strand, 29319893 - 29319855
Alignment:
Q  353 gcatgggcggttctaccgtatggcgaccccgggcggtcg 391  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  29319893 gcatgggcggttctaccgtatggtgacccctggcggtcg 29319855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 13817960 - 13818001
Alignment:
Q  357 gggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  13817960 gggcggttctaccgtatggcgaccccgggcggtcgctcgggc 13818001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 1776559 - 1776519
Alignment:
Q  358 ggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  1776559 ggcggttctaccgtatgacgaccccgggcggtcgcccgggc 1776519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 39434676 - 39434720
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||    
T  39434676 catgggcggttctaccgtgtggcgaccctgggcggtcgcccgggc 39434720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 10033910 - 10033951
Alignment:
Q  357 gggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||||||||||||||||||| || ||||||||||    
T  10033910 gggcggttctaccgtatggcgaccccggacgatcgcccgggc 10033951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 3155818 - 3155774
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||||| |||||||||| ||||||||||||| |||||    
T  3155818 catgggcggttctatcgtatggcgatcccgggcggtcgctcgggc 3155774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 386
Target Start/End: Original strand, 16154989 - 16155021
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggc 386  Q
    |||||||||||||||||||||||||||||||||    
T  16154989 catgggcggttctaccgtatggcgaccccgggc 16155021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 384
Target Start/End: Complemental strand, 16334046 - 16334015
Alignment:
Q  353 gcatgggcggttctaccgtatggcgaccccgg 384  Q
    ||||||||||||||||||||||||||||||||    
T  16334046 gcatgggcggttctaccgtatggcgaccccgg 16334015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 36293808 - 36293766
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgg 396  Q
    |||||||||||||||||| ||||||||||| ||||||| ||||    
T  36293808 catgggcggttctaccgtgtggcgaccccgagcggtcgtccgg 36293766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 394
Target Start/End: Original strand, 14316641 - 14316678
Alignment:
Q  357 gggcggttctaccgtatggcgaccccgggcggtcgccc 394  Q
    |||||||||||||||||||||| | |||||||||||||    
T  14316641 gggcggttctaccgtatggcgatctcgggcggtcgccc 14316678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 26283505 - 26283461
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||| ||||| | |||||| |||||||||||||||||    
T  26283505 catgggcggttccaccgtgtagcgacctcgggcggtcgcccgggc 26283461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 354 - 395
Target Start/End: Original strand, 7433425 - 7433466
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccg 395  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  7433425 catgggcggttctaccgtatggcaaccccgggcggtcgcccg 7433466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 398
Target Start/End: Original strand, 26144234 - 26144279
Alignment:
Q  353 gcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||||    
T  26144234 gcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggc 26144279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 398
Target Start/End: Complemental strand, 32982236 - 32982199
Alignment:
Q  361 ggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||||||||||||||||||||||| |||||    
T  32982236 ggttctaccgtatggcgaccccgggcggtcgcgcgggc 32982199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 23313218 - 23313262
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    ||||||||||||||||||||||||| | |||||||| ||||||||    
T  23313218 catgggcggttctaccgtatggcgatctcgggcggttgcccgggc 23313262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 398
Target Start/End: Complemental strand, 42311125 - 42311084
Alignment:
Q  357 gggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||||||||||||||||| | || ||||||||||    
T  42311125 gggcggttctaccgtatggcgaccccagacgatcgcccgggc 42311084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 358 - 398
Target Start/End: Original strand, 15838270 - 15838310
Alignment:
Q  358 ggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  15838270 ggcggttctaccgtatggcgaccccgggcggtcacccgggc 15838310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 357 - 395
Target Start/End: Complemental strand, 29728570 - 29728532
Alignment:
Q  357 gggcggttctaccgtatggcgaccccgggcggtcgcccg 395  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  29728570 gggcggttctaccgtatggcgaccccggacggtcgcccg 29728532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 39914495 - 39914539
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    ||||| |||||| ||||| | ||||||||||||||||||||||||    
T  39914495 catggacggttccaccgtgtagcgaccccgggcggtcgcccgggc 39914539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 398
Target Start/End: Complemental strand, 480645 - 480600
Alignment:
Q  353 gcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||||    
T  480645 gcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggc 480600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 502 - 546
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||| ||||| | |||| |||||||||||||||||||    
T  502 catgggcggttccaccgtgtagcgatcccgggcggtcgcccgggc 546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 17822 - 17866
Alignment:
Q  354 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggc 398  Q
    |||||||||||||||||| ||||||||||| ||| ||| ||||||    
T  17822 catgggcggttctaccgtgtggcgaccccgagcgatcgtccgggc 17866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University