View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11294_low_15 (Length: 393)

Name: NF11294_low_15
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11294_low_15
NF11294_low_15
[»] chr6 (1 HSPs)
chr6 (1-389)||(8159034-8159422)
[»] chr4 (3 HSPs)
chr4 (107-317)||(18701668-18701878)
chr4 (337-389)||(18701878-18701930)
chr4 (74-107)||(18701618-18701651)
[»] chr3 (2 HSPs)
chr3 (24-302)||(4084080-4084374)
chr3 (338-389)||(4084389-4084440)
[»] chr8 (8 HSPs)
chr8 (24-302)||(44312207-44312489)
chr8 (24-296)||(44301308-44301596)
chr8 (116-301)||(43896073-43896255)
chr8 (110-296)||(44306520-44306704)
chr8 (140-280)||(43895568-43895705)
chr8 (338-389)||(43896271-43896322)
chr8 (338-389)||(44312504-44312555)
chr8 (140-280)||(44305992-44306129)
[»] chr5 (1 HSPs)
chr5 (124-299)||(35856845-35857017)
[»] chr7 (1 HSPs)
chr7 (196-239)||(15040305-15040348)


Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 8159422 - 8159034
Alignment:
Q  1 aagtgttaaatgcagaacacagtatcaataattaagcaacagattcaccataaaaaataagttataaataagaaacaaaccattgcaaagctaataaacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8159422 aagtgttaaatgcagaacacagtatcaataattaagcaacagattcagcataaaaaataagttataaataagaaacaaaccattgcaaagctaataaacc 8159323  T
Q  101 aaaccaattatttctctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcggcagcagaagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8159322 aaaccaattatttctctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcagcagcagaagt 8159223  T
Q  201 cattatatatctaacagacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaacttcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8159222 cattatatatctaacagacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaacttcc 8159123  T
Q  301 ttgatttcattaacttcctcactctcatcatgttcgcgtctcttacccaaacgaggaatctcaatcttcttacccgtgttaacatttgt 389  Q
    ||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8159122 ttgattttatcaacttcctcactctcatcatgttcacgtctcttacccaaacgaggaatctcaatcttcttaccagtgttaacatttgt 8159034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 8e-77; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 107 - 317
Target Start/End: Original strand, 18701668 - 18701878
Alignment:
Q  107 attatttctctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcggcagcagaagtcattat 206  Q
    ||||||||||||||||||||||||||||||||||||||||| | |  ||  |||||||||||||||||||||||||||||||   ||||||||||||| |    
T  18701668 attatttctctagaatgaatcaattcacaccatttgaaaatgtatgcccggaatcttttgagaccgaataagcaggaacatc---agcagaagtcattgt 18701764  T
Q  207 atatctaacagacccat---cggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaacttccttg 303  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  18701765 atatctaacagacccattggcggtaaaagtatctccagattcaagatgagcatcaaaaacaaaaacaatttctccagcatgagcttcatcaacttcctcg 18701864  T
Q  304 atttcattaacttc 317  Q
    |||| |||||||||    
T  18701865 attttattaacttc 18701878  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 337 - 389
Target Start/End: Original strand, 18701878 - 18701930
Alignment:
Q  337 cgtctcttacccaaacgaggaatctcaatcttcttacccgtgttaacatttgt 389  Q
    |||||||| |||||||||||||||| |||||||||||| ||||||||||||||    
T  18701878 cgtctcttgcccaaacgaggaatctgaatcttcttaccagtgttaacatttgt 18701930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 18701618 - 18701651
Alignment:
Q  74 aacaaaccattgcaaagctaataaaccaaaccaa 107  Q
    ||||||||||||||||||||||||||||||||||    
T  18701618 aacaaaccattgcaaagctaataaaccaaaccaa 18701651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 24 - 302
Target Start/End: Original strand, 4084080 - 4084374
Alignment:
Q  24 atcaataattaagcaacagattcaccataaaaaataagttataaataagaaacaaaccattgcaaagctaataaaccaaaccaatt-------------a 110  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| | |||||||| || ||||||||| |             |    
T  4084080 atcaataattaagcaacaaattcaccataaaaaataagttataaataagcaacaaaccatagtaaagctaacaagccaaaccaactggtaagtaggatca 4084179  T
Q  111 tttctctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcggcagcagaagtcattatatat 210  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||   |||||||||||| |||||    
T  4084180 tttctctggaatgaatccattcacaccatttgaaaatttctctcctgaatcctttgagaccgaataagcaggaacatcg---gcagaagtcattgtatat 4084276  T
Q  211 ctaacagacccatcggtaaaagtatctccagattcaagatgagcatca------aacacaaaaacaatttctccagcatgagcttcatcaacttcctt 302  Q
    |||| |||||| || ||||||||||||||||||| ||||  |||||||      ||||||| ||||| ||||||||||||||||||||||||| ||||    
T  4084277 ctaatagacccgtcagtaaaagtatctccagatttaagaatagcatcaaactttaacacaataacaagttctccagcatgagcttcatcaactgcctt 4084374  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 389
Target Start/End: Original strand, 4084389 - 4084440
Alignment:
Q  338 gtctcttacccaaacgaggaatctcaatcttcttacccgtgttaacatttgt 389  Q
    ||||||||  |||||||||||||| |||||||||||| ||||||||||||||    
T  4084389 gtctcttaaacaaacgaggaatcttaatcttcttaccggtgttaacatttgt 4084440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 24 - 302
Target Start/End: Original strand, 44312207 - 44312489
Alignment:
Q  24 atcaataattaagcaacagattcaccataaaaaa-taagttataaataagaaacaaaccattgcaaagctaataaaccaaaccaatt------------- 109  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||  ||| || ||| || ||||||||| |                 
T  44312207 atcaataattaagcaacaaattcaccataaaaaaataagttataaataagcaacaaaccaaagcatagttaacaagccaaaccaactggcgaagtaggat 44312306  T
Q  110 -atttctctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcggcagcagaagtcattatat 208  Q
     | |||||| ||||||||| |||||||||||||||||||||||||||| || |||||||||| ||        ||||||||||||   ||||||||||||    
T  44312307 caattctcttgaatgaatccattcacaccatttgaaaatttctctccagaaacttttgagacgga--------gaacatcggcag---aagtcattatat 44312395  T
Q  209 atctaacagacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaacttcctt 302  Q
    |||||||||||||||| ||||||||||||||||||  ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44312396 atctaacagacccatcagtaaaagtatctccagatctaagaatagcaccaaacacaaaaacaatttctccagcatgagcttcatcaacttcctt 44312489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 24 - 296
Target Start/End: Original strand, 44301308 - 44301596
Alignment:
Q  24 atcaataattaagcaacagattcaccataaaaaataagttataaataagaaacaaaccattgcaaagctaataaaccaaaccaatt-------------- 109  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||| |||||| ||| |||||||||| || |||||| || |                  
T  44301308 atcaataattaagcagcagatttaccataaaaaataagttataaataagcaacaaaacatagcaaagctaacaagccaaacaaactgggtaagtaggatc 44301407  T
Q  110 atttctctagaat-----gaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcggcagcagaagtcatt 204  Q
    ||||| || ||||     |||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||   ||||||| ||||    
T  44301408 atttcactggaatggaatgaatcaattcacaccatttgaaaatttctctccagaatcttttgacaccgaataagtaggaacatcg---gcagaagacatt 44301504  T
Q  205 atatatctaacagacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaac 296  Q
     ||||||||||||||||||| ||||||||||||||||||| ||||  |  | | ||||||| |||||||||||| |||||||||||||||||    
T  44301505 gtatatctaacagacccatcagtaaaagtatctccagatttaagaacaatagctaacacaataacaatttctccggcatgagcttcatcaac 44301596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 116 - 301
Target Start/End: Original strand, 43896073 - 43896255
Alignment:
Q  116 ctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcggcagcagaagtcattatatatctaac 215  Q
    |||||||||||| || ||||||||||||||||||||||||| |||||| |||||  |||||| |||||||||||||||   |||||||| ||||||||||    
T  43896073 ctagaatgaatccatccacaccatttgaaaatttctctccagaatcttatgagatagaataatcaggaacatcggcag---aagtcattgtatatctaac 43896169  T
Q  216 agacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaacttcct 301  Q
    ||||||||| || |||||||||||||||| ||||  |||||| ||||||| || ||| ||||||||||||||||||||||||||||    
T  43896170 agacccatcagtgaaagtatctccagatttaagaatagcatctaacacaataataatctctccagcatgagcttcatcaacttcct 43896255  T

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Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 110 - 296
Target Start/End: Original strand, 44306520 - 44306704
Alignment:
Q  110 atttctctagaatgaatcaattcacaccatttgaaaatt-tctctccacaatcttttgagaccgaataagcaggaacatcggcagcagaagtcattatat 208  Q
    ||||| |||||||||||| ||||||||||||||||||   |||||||| |||||| |||||| ||||||| ||||||||||||||   |||||||| |||    
T  44306520 atttccctagaatgaatccattcacaccatttgaaaaaactctctccagaatcttatgagacagaataagtaggaacatcggcag---aagtcattgtat 44306616  T
Q  209 atctaacagacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaac 296  Q
    |||||||||||||||| ||||||||||||||||||| |||| ||||||| ||||  | ||||||||||||||||||||||||||||||    
T  44306617 atctaacagacccatcagtaaaagtatctccagatttaagaagagcatcgaacaacataacaatttctccagcatgagcttcatcaac 44306704  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 280
Target Start/End: Original strand, 43895568 - 43895705
Alignment:
Q  140 ttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcggcagcagaagtcattatatatctaacagacccatcggtaaaagtatctcc 239  Q
    ||||||||| | ||||| ||||||||||||||||| ||| | ||| || | |||   | ||||||  |||||||||||||||||| | ||||||||||||    
T  43895568 ttgaaaattgccctccagaatcttttgagaccgaacaagtaagaatattgacag---aggtcattgaatatctaacagacccatcagcaaaagtatctcc 43895664  T
Q  240 agattcaagatgagcatcaaacacaaaaacaatttctccag 280  Q
    |||||||   | |||| ||||||||  |||||||| |||||    
T  43895665 agattcacactcagcaccaaacacagcaacaatttgtccag 43895705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 389
Target Start/End: Original strand, 43896271 - 43896322
Alignment:
Q  338 gtctcttacccaaacgaggaatctcaatcttcttacccgtgttaacatttgt 389  Q
    ||||||||  |||||||||||||| |||||||||||| ||||||||||||||    
T  43896271 gtctcttaaacaaacgaggaatctgaatcttcttaccagtgttaacatttgt 43896322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 389
Target Start/End: Original strand, 44312504 - 44312555
Alignment:
Q  338 gtctcttacccaaacgaggaatctcaatcttcttacccgtgttaacatttgt 389  Q
    ||||||||||||||| |||||||| |||||||||||| |||||||| |||||    
T  44312504 gtctcttacccaaacaaggaatcttaatcttcttaccagtgttaacgtttgt 44312555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 280
Target Start/End: Original strand, 44305992 - 44306129
Alignment:
Q  140 ttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcggcagcagaagtcattatatatctaacagacccatcggtaaaagtatctcc 239  Q
    ||||||||| | ||||| ||||||||||||||||| ||| | ||| || | |||   | ||||||  ||||||||| |||||||| | ||||||||||||    
T  44305992 ttgaaaattgccctccagaatcttttgagaccgaacaagtaagaatattgacag---aggtcattgaatatctaacggacccatcagcaaaagtatctcc 44306088  T
Q  240 agattcaagatgagcatcaaacacaaaaacaatttctccag 280  Q
    |||||||   | |||| ||||||||  |||||||| |||||    
T  44306089 agattcacactcagcaccaaacacagcaacaatttgtccag 44306129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 299
Target Start/End: Complemental strand, 35857017 - 35856845
Alignment:
Q  124 aatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcggcagcagaagtcattatatatctaacagacccat 223  Q
    |||| ||||||| |||||||| ||| ||| | | |||||||||||||||||||| || |||||| |   |||||||||||     |||||||||||||||    
T  35857017 aatccattcacaacatttgaagattgctcgctagaatcttttgagaccgaataatcaagaacattg---gcagaagtcatagcccatctaacagacccat 35856921  T
Q  224 cggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaacttc 299  Q
    | ||||| || ||||| | | ||  || | ||||| | |||| |||||||| |||||||||||| |||| ||||||    
T  35856920 cagtaaatgtttctcctggtgcacaatcaacatcacatacaacaacaatttgtccagcatgagcctcattaacttc 35856845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 15040305 - 15040348
Alignment:
Q  196 gaagtcattatatatctaacagacccatcggtaaaagtatctcc 239  Q
    ||||||||| ||||| ||||||||||||| ||||||||||||||    
T  15040305 gaagtcattgtatatttaacagacccatcagtaaaagtatctcc 15040348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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