View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11294_low_16 (Length: 391)
Name: NF11294_low_16
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11294_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 19351433 - 19351791
Alignment:
| Q |
18 |
aaccaagcgtcaatgcattcagtatgaaatgcgtgacagcagagaggaagaagacggaggagatcgttttgctcgaactttgataaacaaacggcgcagt |
117 |
Q |
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|||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
19351433 |
aaccaagcgtcaatgcattccgtgtggaatgcgtgacagcagagaggaagaagacggaggagatcgttttgctcgaactttgataagcaaacggcacagt |
19351532 |
T |
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| Q |
118 |
cgccggagacgacggtggaggaacggcgtttgatggatgagaaggtgaaaatcgggagagaatcaacgacagaagttgtagtggacgaagtagtggtgac |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||| |||||||| |
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| T |
19351533 |
cgccggagacaacggtggaggaacggcgtttgatggatgagaaggtgaaaatcgggagagaatcaacgacggaagatgaagtggacgaagtcgtggtgac |
19351632 |
T |
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| Q |
218 |
cggagaaactctaacagtggaggaggatgacggagagaaacggcgacgacggaggatgaagtagagaatgaagaaaacagtgacggtaacggcgaaaacg |
317 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19351633 |
cggagaaactctaaaaatggaggaggatgacggagagaaacggcgacgacggaggatgaagtagagaatgaagaaaacggtgacggtaacggcgaaaacg |
19351732 |
T |
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| Q |
318 |
gttacggttatgaaaaggttgtgtgaggaatttgtgtttcccattttcacgttgtgtgt |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19351733 |
gttacggttatgaaaaggttgtgtgaggaatttgtgtttcccattttcacgttgtgtgt |
19351791 |
T |
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