View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11294_low_17 (Length: 388)
Name: NF11294_low_17
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11294_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 495399 - 495035
Alignment:
| Q |
1 |
taaagctggcgaagatggccatggtttgattatgaagaaatgggggtttcgtgtgctaaccaagaatggtttaaaaaggacatcggaaacacaacttcct |
100 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
495399 |
taaagctggcgaggatggccatggtttgattatgaagaaatgggggtttcgcgtgctaaccaagaagggtttaaaaaggacatcggaaacacaacttcct |
495300 |
T |
|
| Q |
101 |
atgccgttcattgagaatgtaggtgaaagaagcagaagagttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgaga |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
495299 |
atgccgttcattgagaatgtagggcaaagaagcagaagagttgagcctaaaatcaagcttccttacaattggtcagtttctgatgaagatgaagttgaga |
495200 |
T |
|
| Q |
201 |
atgaagaagccaagggaaaagaaatcaatctctttaatctaggccttttgacaggcagactacaccgaaaacacaatattttctctgttcaagggggaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||| |
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| T |
495199 |
atgaagaagccaagggaaaagaaatcaatctctttaatctaggccttttgacaggcagactacactgattacacattattttctctgttctagggggaaa |
495100 |
T |
|
| Q |
301 |
ttatatttttaaagcattgatataatagt-aattactaataactaatatatcatagtgcatcaaa |
364 |
Q |
| |
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|||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
495099 |
ttatatttttaaagcattgatacaatagtaaattactaataactaatttatcatagtgcatcaaa |
495035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 25500970 - 25501091
Alignment:
| Q |
128 |
agaagcagaagagttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgagaatgaagaagccaagggaaaagaaatca |
227 |
Q |
| |
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| T |
25500970 |
agaagcagtagcattgagcctaaaatccaacttccttacaattggtatgtttctgatgaagatgaagtcgagatgaaacaagccaaggggaaagtaacta |
25501069 |
T |
|
| Q |
228 |
atctctttaatctaggcctttt |
249 |
Q |
| |
|
||||||||||||| |||||||| |
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| T |
25501070 |
atctctttaatcttggcctttt |
25501091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 125 - 247
Target Start/End: Original strand, 25492588 - 25492710
Alignment:
| Q |
125 |
gaaagaagcagaagagttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgagaatgaagaagccaagggaaaagaaa |
224 |
Q |
| |
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||||||||||| || |||||||||||||| | |||||||||||||||| |||| || |||||||||||| |||| || |||||||||| ||||||| |
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| T |
25492588 |
gaaagaagcagtagcattgagcctaaaatccaacttccttacaattggtatgtttgtgatgaagatgaagtcgagatgaaacaagccaaggggaaagaaa |
25492687 |
T |
|
| Q |
225 |
tcaatctctttaatctaggcctt |
247 |
Q |
| |
|
||||||||||||| |||||| |
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| T |
25492688 |
ctgatctctttaatcttggcctt |
25492710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 249
Target Start/End: Original strand, 25642403 - 25642511
Alignment:
| Q |
141 |
ttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgagaatgaagaagccaagggaaaagaaatcaatctctttaatct |
240 |
Q |
| |
|
|||||||||||||| | || ||||||||||||| ||||||| ||||||||||| ||||| || | ||||||||| ||||||| ||||||||||||| |
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| T |
25642403 |
ttgagcctaaaatccaactcccttacaattggtttgtttctgatgaagatgaagccgagaaggatggagccaaggggaaagaaactgatctctttaatct |
25642502 |
T |
|
| Q |
241 |
aggcctttt |
249 |
Q |
| |
|
|||||||| |
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|
| T |
25642503 |
tggcctttt |
25642511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 249
Target Start/End: Complemental strand, 25473950 - 25473842
Alignment:
| Q |
141 |
ttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgagaatga-agaagccaagggaaaagaaatcaatctctttaatc |
239 |
Q |
| |
|
||||| |||||||| | |||||||||||||||| ||||||| |||||| | | |||||||| |||| ||||||||||||||| | |||||||||||| |
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| T |
25473950 |
ttgagactaaaatccaacttccttacaattggttagtttctaacgaagattcaatcgagaatgatagaa-ccaagggaaaagaaaccgatctctttaatc |
25473852 |
T |
|
| Q |
240 |
taggcctttt |
249 |
Q |
| |
|
| |||||||| |
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|
| T |
25473851 |
ttggcctttt |
25473842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 249
Target Start/End: Original strand, 25449968 - 25450057
Alignment:
| Q |
160 |
tccttacaattggtcagtttctgttgaagatgaagttgagaatgaagaagccaagggaaaagaaatcaatctctttaatctaggcctttt |
249 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| ||||| || ||||||||||| || |||| ||||||||||||| |||||||| |
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| T |
25449968 |
tccttacaattggttagtttctaaagaagatgaagccgagaaagatgaagccaaggggaaggaaactgatctctttaatcttggcctttt |
25450057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 25429197 - 25429256
Alignment:
| Q |
141 |
ttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgaga |
200 |
Q |
| |
|
|||||||||||||| | | |||||||||||||| |||||||| ||||||| |||| |||| |
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|
| T |
25429197 |
ttgagcctaaaatctaacatccttacaattggttagtttctgatgaagataaagtcgaga |
25429256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 248
Target Start/End: Complemental strand, 25431300 - 25431183
Alignment:
| Q |
131 |
agcagaagagttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgagaatgaagaagccaagggaaaagaaatcaatc |
230 |
Q |
| |
|
||||| ||| ||||||| |||||| | |||||||||||||||| |||||||| ||||||||| ||||| || | ||||||| | || ||||| || |
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| T |
25431300 |
agcagtagatttgagccgaaaatccaacttccttacaattggttagtttctgacaaagatgaagccgagaaggatgcagccaagcggaaggaaattggtc |
25431201 |
T |
|
| Q |
231 |
tctttaatctaggccttt |
248 |
Q |
| |
|
||| |||||| ||||||| |
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| T |
25431200 |
tctctaatcttggccttt |
25431183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 248
Target Start/End: Original strand, 35152984 - 35153086
Alignment:
| Q |
146 |
cctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgagaatgaagaagccaagggaaaagaaatcaatctctttaatctaggcc |
245 |
Q |
| |
|
||||||||| ||||||| |||||||||| |||| ||| || || |||||||||||| ||||||||| ||||||||| |||| | |||||| |||| |
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|
| T |
35152984 |
cctaaaatccagcttccctacaattggttagttactgaggaggaagaagttgagaattctgaagccaagtcaaaagaaattgatctttataatctgggcc |
35153083 |
T |
|
| Q |
246 |
ttt |
248 |
Q |
| |
|
||| |
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|
| T |
35153084 |
ttt |
35153086 |
T |
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