View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11294_low_2 (Length: 848)

Name: NF11294_low_2
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11294_low_2
NF11294_low_2
[»] chr1 (20 HSPs)
chr1 (18-349)||(45214657-45214987)
chr1 (605-831)||(45214657-45214884)
chr1 (413-479)||(11318766-11318832)
chr1 (370-436)||(11318766-11318832)
chr1 (413-479)||(11476787-11476853)
chr1 (370-436)||(11476787-11476853)
chr1 (370-436)||(28244199-28244267)
chr1 (413-479)||(28244199-28244267)
chr1 (370-436)||(11471322-11471388)
chr1 (413-479)||(11471322-11471388)
chr1 (500-543)||(45214944-45214987)
chr1 (370-434)||(17430769-17430834)
chr1 (415-479)||(17430769-17430834)
chr1 (415-464)||(17431708-17431757)
chr1 (385-434)||(17431708-17431757)
chr1 (370-436)||(50017608-50017674)
chr1 (413-479)||(50017608-50017674)
chr1 (417-464)||(50027519-50027566)
chr1 (385-432)||(50027519-50027566)
chr1 (217-259)||(45207660-45207702)
[»] chr6 (8 HSPs)
chr6 (370-436)||(19305851-19305917)
chr6 (413-479)||(19305851-19305917)
chr6 (370-436)||(10122332-10122398)
chr6 (413-479)||(10122332-10122398)
chr6 (413-479)||(10126554-10126620)
chr6 (370-436)||(10126554-10126620)
chr6 (415-464)||(19310342-19310391)
chr6 (385-434)||(19310342-19310391)
[»] chr2 (8 HSPs)
chr2 (413-479)||(43159352-43159418)
chr2 (370-436)||(43159352-43159418)
chr2 (370-436)||(38250105-38250171)
chr2 (413-479)||(38250105-38250171)
chr2 (413-479)||(38255472-38255538)
chr2 (370-436)||(38255472-38255538)
chr2 (370-436)||(43154102-43154168)
chr2 (413-479)||(43154102-43154168)
[»] chr7 (6 HSPs)
chr7 (413-475)||(22492411-22492473)
chr7 (374-436)||(22492411-22492473)
chr7 (370-436)||(22489252-22489318)
chr7 (413-479)||(22489252-22489318)
chr7 (370-434)||(48944292-48944356)
chr7 (415-479)||(48944292-48944356)
[»] chr5 (10 HSPs)
chr5 (413-479)||(25384068-25384134)
chr5 (370-436)||(25384068-25384134)
chr5 (378-436)||(25482726-25482784)
chr5 (413-471)||(25482726-25482784)
chr5 (370-436)||(25379448-25379514)
chr5 (413-479)||(25379448-25379514)
chr5 (413-457)||(10292978-10293022)
chr5 (392-436)||(10292978-10293022)
chr5 (417-457)||(25484273-25484313)
chr5 (392-432)||(25484273-25484313)
[»] chr4 (10 HSPs)
chr4 (370-431)||(48792819-48792880)
chr4 (418-479)||(48792819-48792880)
chr4 (415-455)||(48796046-48796086)
chr4 (394-434)||(48796046-48796086)
chr4 (372-434)||(28166913-28166976)
chr4 (415-477)||(28166913-28166976)
chr4 (413-479)||(28167595-28167662)
chr4 (370-436)||(28167595-28167662)
chr4 (374-436)||(54362234-54362297)
chr4 (413-475)||(54362234-54362297)
[»] chr3 (2 HSPs)
chr3 (386-436)||(33862375-33862425)
chr3 (413-463)||(33862375-33862425)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 45214657 - 45214987
Alignment:
Q  18 gaaatgagttagtggactttttattagtcatcgatttcaagcaatacaaacctcacatcatttcatgttat-acgtgactatgttgaagatgtgtggaag 116  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45214657 gaaatgagtttgtggactttttattagtcatcgatttcaaacaatacaaacctcacatcatttcatgttattacgtgactatgttgaagatgtgtggaag 45214756  T
Q  117 tggaaagtaattaatagggtcacaaacttttcagcctgactagaaaatgaaacatttttgcagagaaatgatctttatttataggatagtcaaacggtct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45214757 tggaaagtaattaatagggtcacaaacttttcagcctgactagaaaatgaaacatttttgcagagaaatgatctttatttataggatagtcaaacggtct 45214856  T
Q  217 ttgtttgcatggagagatacccttttgggaaataattaagaaaagacaaaagatcagaagaaaataatggattagaaacnnnnnnnnntgtgtaatagag 316  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||          |||||||||||    
T  45214857 ttgtttgcatggagagatacccttttgggaaataattaag-aaagacaaaagatcagaagaaaataatggattagaaacaaaaaaaaa-gtgtaatagag 45214954  T
Q  317 gaggatcaggatggaccagtggcaatagcaatg 349  Q
    |||||||||||||||||||||||||||||||||    
T  45214955 gaggatcaggatggaccagtggcaatagcaatg 45214987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 605 - 831
Target Start/End: Complemental strand, 45214884 - 45214657
Alignment:
Q  605 ccaaaagggtatctctccatgcaaacaaagaccgtttgactatcctataaataaagatcatttctctgcaaaaatgtttcattttctagtcaggctgaaa 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45214884 ccaaaagggtatctctccatgcaaacaaagaccgtttgactatcctataaataaagatcatttctctgcaaaaatgtttcattttctagtcaggctgaaa 45214785  T
Q  705 agtttgtgaccctattaattactttccacttccacacatcttcaacatagtcacgt-ataacatgaaatgatgtgaggtttgtattgcttgaaatcgatg 803  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  45214784 agtttgtgaccctattaattactttccacttccacacatcttcaacatagtcacgtaataacatgaaatgatgtgaggtttgtattgtttgaaatcgatg 45214685  T
Q  804 actaataaaaagtccactaactcatttc 831  Q
    ||||||||||||||||| ||||||||||    
T  45214684 actaataaaaagtccacaaactcatttc 45214657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 413 - 479
Target Start/End: Original strand, 11318766 - 11318832
Alignment:
Q  413 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 479  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11318766 agggtgtgccatgtggcacaccctgattggacaatgttatataacttaaaatacccaatgttacaca 11318832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 370 - 436
Target Start/End: Complemental strand, 11318832 - 11318766
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 436  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  11318832 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacatggcacaccct 11318766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 413 - 479
Target Start/End: Original strand, 11476787 - 11476853
Alignment:
Q  413 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 479  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11476787 agggtgtgccatgtggcacaccctgattggacaatgttatataacttaaaatacccaatgttacaca 11476853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 370 - 436
Target Start/End: Complemental strand, 11476853 - 11476787
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 436  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  11476853 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacatggcacaccct 11476787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 370 - 436
Target Start/End: Original strand, 28244199 - 28244267
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacg--tggcacaccct 436  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  28244199 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacgtatggcacaccct 28244267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 413 - 479
Target Start/End: Complemental strand, 28244267 - 28244199
Alignment:
Q  413 agggtgtgcca--cgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 479  Q
    |||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28244267 agggtgtgccatacgtggcacaccctgattggacaatgttatataacttaaaatacccaatgttacaca 28244199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 370 - 436
Target Start/End: Original strand, 11471322 - 11471388
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 436  Q
    |||||||||| | | ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11471322 tgtgtaacatagtggattttaagttatataacattgtccaatcagggtgtgccacgtggcacaccct 11471388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 413 - 479
Target Start/End: Complemental strand, 11471388 - 11471322
Alignment:
Q  413 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 479  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| | | ||||||||||    
T  11471388 agggtgtgccacgtggcacaccctgattggacaatgttatataacttaaaatccactatgttacaca 11471322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 500 - 543
Target Start/End: Complemental strand, 45214987 - 45214944
Alignment:
Q  500 cattgctattgccactggtccatcctgatcctcctctattacac 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  45214987 cattgctattgccactggtccatcctgatcctcctctattacac 45214944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 370 - 434
Target Start/End: Original strand, 17430769 - 17430834
Alignment:
Q  370 tgtgtaacattgggt-attttaagttatataacattgcccaatcagggtgtgccacgtggcacacc 434  Q
    ||||||||||||||  |||||| ||||||||| |||| ||||||||| ||||||||||||||||||    
T  17430769 tgtgtaacattggggcattttatgttatataatattgtccaatcaggatgtgccacgtggcacacc 17430834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 415 - 479
Target Start/End: Complemental strand, 17430834 - 17430769
Alignment:
Q  415 ggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaat-acccaatgttacaca 479  Q
    |||||||||||||||||| ||||||||| |||| ||||||||| ||||||  ||||||||||||||    
T  17430834 ggtgtgccacgtggcacatcctgattggacaatattatataacataaaatgccccaatgttacaca 17430769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 415 - 464
Target Start/End: Original strand, 17431708 - 17431757
Alignment:
Q  415 ggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaat 464  Q
    |||||||||| ||||||||||||||||| |||||||||||||| ||||||    
T  17431708 ggtgtgccacatggcacaccctgattggacaatgttatataacataaaat 17431757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 17431757 - 17431708
Alignment:
Q  385 attttaagttatataacattgcccaatcagggtgtgccacgtggcacacc 434  Q
    |||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  17431757 attttatgttatataacattgtccaatcagggtgtgccatgtggcacacc 17431708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 370 - 436
Target Start/End: Original strand, 50017608 - 50017674
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 436  Q
    |||||||||| | | |||||| |||||||||||||| ||||| ||| | ||||||||||||||||||    
T  50017608 tgtgtaacatagtggattttatgttatataacattgtccaataaggatatgccacgtggcacaccct 50017674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 413 - 479
Target Start/End: Complemental strand, 50017674 - 50017608
Alignment:
Q  413 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 479  Q
    |||||||||||||||||| | ||| ||||| |||||||||||||| |||||| | | ||||||||||    
T  50017674 agggtgtgccacgtggcatatccttattggacaatgttatataacataaaatccactatgttacaca 50017608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 417 - 464
Target Start/End: Original strand, 50027519 - 50027566
Alignment:
Q  417 tgtgccacgtggcacaccctgattgggcaatgttatataacttaaaat 464  Q
    |||||||||||||||||| |||||||||||| ||| ||||| ||||||    
T  50027519 tgtgccacgtggcacaccttgattgggcaatattacataacataaaat 50027566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 385 - 432
Target Start/End: Complemental strand, 50027566 - 50027519
Alignment:
Q  385 attttaagttatataacattgcccaatcagggtgtgccacgtggcaca 432  Q
    |||||| ||||| ||| |||||||||||| ||||||||||||||||||    
T  50027566 attttatgttatgtaatattgcccaatcaaggtgtgccacgtggcaca 50027519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 45207660 - 45207702
Alignment:
Q  217 ttgtttgcatggagagatacccttttgggaaataattaagaaa 259  Q
    ||||||||||| ||||||||| ||||||||||| |||||||||    
T  45207660 ttgtttgcatgaagagataccattttgggaaatgattaagaaa 45207702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 6e-27; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 370 - 436
Target Start/End: Original strand, 19305851 - 19305917
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 436  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19305851 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacgtggcacaccct 19305917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 413 - 479
Target Start/End: Complemental strand, 19305917 - 19305851
Alignment:
Q  413 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 479  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19305917 agggtgtgccacgtggcacaccctgattggacaatgttatataacttaaaatacccaatgttacaca 19305851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 370 - 436
Target Start/End: Original strand, 10122332 - 10122398
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 436  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  10122332 tgtgtaacattgggtattttatgttatataacattgtccaatcagggtgtgccacgtggcacaccct 10122398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 413 - 479
Target Start/End: Complemental strand, 10122398 - 10122332
Alignment:
Q  413 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 479  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  10122398 agggtgtgccacgtggcacaccctgattggacaatgttatataacataaaatacccaatgttacaca 10122332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 413 - 479
Target Start/End: Original strand, 10126554 - 10126620
Alignment:
Q  413 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 479  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| |||||| | | ||||||||||    
T  10126554 agggtgtgccacgtggcacacccttattggacaatgttatataacataaaatccactatgttacaca 10126620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 370 - 436
Target Start/End: Complemental strand, 10126620 - 10126554
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 436  Q
    |||||||||| | | |||||| |||||||||||||| ||||| ||||||||||||||||||||||||    
T  10126620 tgtgtaacatagtggattttatgttatataacattgtccaataagggtgtgccacgtggcacaccct 10126554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 415 - 464
Target Start/End: Original strand, 19310342 - 19310391
Alignment:
Q  415 ggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaat 464  Q
    |||||||||||||||||| ||| ||||| |||||||||||||| ||||||    
T  19310342 ggtgtgccacgtggcacatccttattggacaatgttatataacataaaat 19310391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 19310391 - 19310342
Alignment:
Q  385 attttaagttatataacattgcccaatcagggtgtgccacgtggcacacc 434  Q
    |||||| |||||||||||||| ||||| ||| ||||||||||||||||||    
T  19310391 attttatgttatataacattgtccaataaggatgtgccacgtggcacacc 19310342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 6e-27; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 413 - 479
Target Start/End: Original strand, 43159352 - 43159418
Alignment:
Q  413 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 479  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43159352 agggtgtgccacgtggcacaccctgattggacaatgttatataacttaaaatacccaatgttacaca 43159418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 370 - 436
Target Start/End: Complemental strand, 43159418 - 43159352
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 436  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43159418 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacgtggcacaccct 43159352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 370 - 436
Target Start/End: Original strand, 38250105 - 38250171
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 436  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  38250105 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacatggcacaccct 38250171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 413 - 479
Target Start/End: Complemental strand, 38250171 - 38250105
Alignment:
Q  413 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 479  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38250171 agggtgtgccatgtggcacaccctgattggacaatgttatataacttaaaatacccaatgttacaca 38250105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 413 - 479
Target Start/End: Original strand, 38255472 - 38255538
Alignment:
Q  413 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 479  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| | | ||||||||||    
T  38255472 agggtgtgccacgtggcacaccctgattggacaatgttatataacttaaaatccactatgttacaca 38255538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 370 - 436
Target Start/End: Complemental strand, 38255538 - 38255472
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 436  Q
    |||||||||| | | ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38255538 tgtgtaacatagtggattttaagttatataacattgtccaatcagggtgtgccacgtggcacaccct 38255472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 370 - 436
Target Start/End: Original strand, 43154102 - 43154168
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 436  Q
    |||||||||| | | ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43154102 tgtgtaacatagtggattttaagttatataacattgtccaatcagggtgtgccacgtggcacaccct 43154168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 413 - 479
Target Start/End: Complemental strand, 43154168 - 43154102
Alignment:
Q  413 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 479  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| | | ||||||||||    
T  43154168 agggtgtgccacgtggcacaccctgattggacaatgttatataacttaaaatccactatgttacaca 43154102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 2e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 413 - 475
Target Start/End: Original strand, 22492411 - 22492473
Alignment:
Q  413 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgtta 475  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22492411 agggtgtgccacgtggcacatcctgattgggcaatgttatataacttaaaatacccaatgtta 22492473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 374 - 436
Target Start/End: Complemental strand, 22492473 - 22492411
Alignment:
Q  374 taacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 436  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22492473 taacattgggtattttaagttatataacattgcccaatcaggatgtgccacgtggcacaccct 22492411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 370 - 436
Target Start/End: Original strand, 22489252 - 22489318
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 436  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||| | ||||||||||    
T  22489252 tgtgtaacattgggtattttaagttatataacattgttcaatcagggtgtgccatgcggcacaccct 22489318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 413 - 479
Target Start/End: Complemental strand, 22489318 - 22489252
Alignment:
Q  413 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 479  Q
    |||||||||| | ||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  22489318 agggtgtgccgcatggcacaccctgattgaacaatgttatataacttaaaatacccaatgttacaca 22489252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 370 - 434
Target Start/End: Original strand, 48944292 - 48944356
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacacc 434  Q
    |||||||||||||  |||||| ||||||||||||||  || ||||||||||||||||||||||||    
T  48944292 tgtgtaacattggacattttatgttatataacattgttcagtcagggtgtgccacgtggcacacc 48944356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 415 - 479
Target Start/End: Complemental strand, 48944356 - 48944292
Alignment:
Q  415 ggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 479  Q
    |||||||||||||||||||||||| ||  |||||||||||||| ||||||  |||||||||||||    
T  48944356 ggtgtgccacgtggcacaccctgactgaacaatgttatataacataaaatgtccaatgttacaca 48944292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 2e-24; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 413 - 479
Target Start/End: Original strand, 25384068 - 25384134
Alignment:
Q  413 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 479  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  25384068 agggtgtgccacgtggcacaccctgattggaccatgttatataacttaaaatacccaatgttacaca 25384134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 370 - 436
Target Start/End: Complemental strand, 25384134 - 25384068
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 436  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  25384134 tgtgtaacattgggtattttaagttatataacatggtccaatcagggtgtgccacgtggcacaccct 25384068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 378 - 436
Target Start/End: Original strand, 25482726 - 25482784
Alignment:
Q  378 attgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 436  Q
    ||||| |||||||||||||||||||||||||||| ||| |||||||| |||||||||||    
T  25482726 attggatattttaagttatataacattgcccaattaggatgtgccacatggcacaccct 25482784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 413 - 471
Target Start/End: Complemental strand, 25482784 - 25482726
Alignment:
Q  413 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaat 471  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||||||||| |||||    
T  25482784 agggtgtgccatgtggcacatcctaattgggcaatgttatataacttaaaatatccaat 25482726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 370 - 436
Target Start/End: Original strand, 25379448 - 25379514
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 436  Q
    |||||||||| | | |||||| |||||||||||||| ||||| |||||||||||| |||||||||||    
T  25379448 tgtgtaacatagtggattttatgttatataacattgtccaataagggtgtgccacatggcacaccct 25379514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 413 - 479
Target Start/End: Complemental strand, 25379514 - 25379448
Alignment:
Q  413 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 479  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||| |||||| | | ||||||||||    
T  25379514 agggtgtgccatgtggcacacccttattggacaatgttatataacataaaatccactatgttacaca 25379448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 413 - 457
Target Start/End: Original strand, 10292978 - 10293022
Alignment:
Q  413 agggtgtgccacgtggcacaccctgattgggcaatgttatataac 457  Q
    |||||||||||||||||||||| | ||||| ||||||||||||||    
T  10292978 agggtgtgccacgtggcacaccttaattggccaatgttatataac 10293022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 392 - 436
Target Start/End: Complemental strand, 10293022 - 10292978
Alignment:
Q  392 gttatataacattgcccaatcagggtgtgccacgtggcacaccct 436  Q
    |||||||||||||| ||||| | ||||||||||||||||||||||    
T  10293022 gttatataacattggccaattaaggtgtgccacgtggcacaccct 10292978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 417 - 457
Target Start/End: Original strand, 25484273 - 25484313
Alignment:
Q  417 tgtgccacgtggcacaccctgattgggcaatgttatataac 457  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  25484273 tgtgccacgtggcacacccttattggacaatgttatataac 25484313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 25484313 - 25484273
Alignment:
Q  392 gttatataacattgcccaatcagggtgtgccacgtggcaca 432  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  25484313 gttatataacattgtccaataagggtgtgccacgtggcaca 25484273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 370 - 431
Target Start/End: Original strand, 48792819 - 48792880
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcac 431  Q
    ||||||||||||   |||||| | ||||||||||||||||||||||||||||||||||||||    
T  48792819 tgtgtaacattgaccattttatggtatataacattgcccaatcagggtgtgccacgtggcac 48792880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 418 - 479
Target Start/End: Complemental strand, 48792880 - 48792819
Alignment:
Q  418 gtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 479  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||   ||||||||||||    
T  48792880 gtgccacgtggcacaccctgattgggcaatgttatataccataaaatggtcaatgttacaca 48792819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 415 - 455
Target Start/End: Original strand, 48796046 - 48796086
Alignment:
Q  415 ggtgtgccacgtggcacaccctgattgggcaatgttatata 455  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48796046 ggtgtgccacgtggcacaccctgattgggcaatgttatata 48796086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 394 - 434
Target Start/End: Complemental strand, 48796086 - 48796046
Alignment:
Q  394 tatataacattgcccaatcagggtgtgccacgtggcacacc 434  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48796086 tatataacattgcccaatcagggtgtgccacgtggcacacc 48796046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 372 - 434
Target Start/End: Original strand, 28166913 - 28166976
Alignment:
Q  372 tgtaacattgggtattttaa-gttatataacattgcccaatcagggtgtgccacgtggcacacc 434  Q
    ||||||||||||  |||||| |||||||||||||| | ||||||||||||||||||||||||||    
T  28166913 tgtaacattgggggttttaatgttatataacattggcgaatcagggtgtgccacgtggcacacc 28166976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 415 - 477
Target Start/End: Complemental strand, 28166976 - 28166913
Alignment:
Q  415 ggtgtgccacgtggcacaccctgattgggcaatgttatataac-ttaaaatacccaatgttaca 477  Q
    |||||||||||||||||||||||||| | |||||||||||||| ||||||  ||||||||||||    
T  28166976 ggtgtgccacgtggcacaccctgattcgccaatgttatataacattaaaacccccaatgttaca 28166913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 413 - 479
Target Start/End: Original strand, 28167595 - 28167662
Alignment:
Q  413 agggtgtgccacgtggcacaccctgattgggcaatgttatataac-ttaaaatacccaatgttacaca 479  Q
    ||||||||| |||||||||||||||||| | |||||||||||||| ||||||  ||||||||||||||    
T  28167595 agggtgtgcgacgtggcacaccctgattcgccaatgttatataacattaaaacccccaatgttacaca 28167662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 370 - 436
Target Start/End: Complemental strand, 28167662 - 28167595
Alignment:
Q  370 tgtgtaacattgggtattttaa-gttatataacattgcccaatcagggtgtgccacgtggcacaccct 436  Q
    ||||||||||||||  |||||| |||||||||||||| | |||||||||||||||||| |||||||||    
T  28167662 tgtgtaacattgggggttttaatgttatataacattggcgaatcagggtgtgccacgtcgcacaccct 28167595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 374 - 436
Target Start/End: Original strand, 54362234 - 54362297
Alignment:
Q  374 taacattgggtattttaa-gttatataacattgcccaatcagggtgtgccacgtggcacaccct 436  Q
    |||||||||| ||||| | |||||||||||||||| |||||||||||||||| |||||||||||    
T  54362234 taacattgggcatttttatgttatataacattgcctaatcagggtgtgccacatggcacaccct 54362297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 413 - 475
Target Start/End: Complemental strand, 54362297 - 54362234
Alignment:
Q  413 agggtgtgccacgtggcacaccctgattgggcaatgttatataac-ttaaaatacccaatgtta 475  Q
    ||||||||||| |||||||||||||||| |||||||||||||||| | ||||| ||||||||||    
T  54362297 agggtgtgccatgtggcacaccctgattaggcaatgttatataacataaaaatgcccaatgtta 54362234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 386 - 436
Target Start/End: Original strand, 33862375 - 33862425
Alignment:
Q  386 ttttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 436  Q
    ||||| ||||||||||| |||||| |||||||||||||| |||||||||||    
T  33862375 ttttatgttatataacactgcccattcagggtgtgccacatggcacaccct 33862425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 33862425 - 33862375
Alignment:
Q  413 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaa 463  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||| |||||    
T  33862425 agggtgtgccatgtggcacaccctgaatgggcagtgttatataacataaaa 33862375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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