View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11294_low_21 (Length: 355)

Name: NF11294_low_21
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11294_low_21
NF11294_low_21
[»] chr6 (5 HSPs)
chr6 (26-199)||(6254516-6254688)
chr6 (227-337)||(6254725-6254839)
chr6 (1-29)||(1751666-1751694)
chr6 (1-29)||(3849043-3849071)
chr6 (1-29)||(21527476-21527504)
[»] chr4 (7 HSPs)
chr4 (226-337)||(54418714-54418825)
chr4 (26-199)||(54418864-54419032)
chr4 (1-31)||(668204-668234)
chr4 (2-32)||(21342355-21342385)
chr4 (1-31)||(37209526-37209556)
chr4 (1-29)||(13629428-13629456)
chr4 (1-29)||(50623395-50623423)
[»] chr2 (3 HSPs)
chr2 (89-177)||(5992996-5993084)
chr2 (233-273)||(5992894-5992934)
chr2 (1-29)||(34399180-34399208)
[»] chr5 (6 HSPs)
chr5 (1-34)||(1795348-1795381)
chr5 (1-31)||(39073002-39073032)
chr5 (1-30)||(38503031-38503060)
chr5 (1-30)||(42394359-42394388)
chr5 (1-29)||(4985405-4985433)
chr5 (1-29)||(38297848-38297876)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-31)||(184362-184392)
[»] chr7 (5 HSPs)
chr7 (1-31)||(25291082-25291112)
chr7 (1-31)||(35112405-35112435)
chr7 (1-31)||(44480379-44480409)
chr7 (1-29)||(39617445-39617473)
chr7 (1-29)||(41675423-41675451)
[»] chr3 (5 HSPs)
chr3 (1-31)||(25842083-25842113)
chr3 (1-31)||(36371070-36371100)
chr3 (1-30)||(15646437-15646466)
chr3 (1-30)||(41425606-41425635)
chr3 (1-29)||(7259283-7259311)
[»] chr1 (4 HSPs)
chr1 (1-31)||(31588970-31589000)
chr1 (1-29)||(1677194-1677222)
chr1 (1-29)||(35531526-35531554)
chr1 (1-29)||(48508111-48508139)
[»] chr8 (2 HSPs)
chr8 (1-30)||(3443876-3443905)
chr8 (1-30)||(23429886-23429915)


Alignment Details
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 6254516 - 6254688
Alignment:
Q  26 tatataggaaggattcatatattttctgttctt--attttgttcatcagagcattgaatttcattttttaaaattgtttagcaccgtaaagagtctttgg 123  Q
    |||||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||||||||||| ||||||||||||||  | ||||||||||||    
T  6254516 tatataggaaggattcatatattttccgttcttgtattttgtttatcagagcattgaatttcattttttgaaattgtttagcactatcaagagtctttgg 6254615  T
Q  124 acataattagcatattaagaagtatcttaattacttcttagtgatattgaaattattactttacctaataaaaatt 199  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||   ||| ||||||||||||||||||    
T  6254616 acataattagcatattgagaagtatcttaattacttcttactgatattgaa---attgctttacctaataaaaatt 6254688  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 227 - 337
Target Start/End: Original strand, 6254725 - 6254839
Alignment:
Q  227 ttacttcttcattcagaaattgacctgtcactatatagt----atcttctagttctacctaatgtgtctttgtattaaatcatcaatttgtaccttagtc 322  Q
    ||||||||||||||||| |||||||||||||||||||||    |||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||    
T  6254725 ttacttcttcattcagatattgacctgtcactatatagttagtatcttctagttctacctactgtgtctttgtattcaatcatcaatttgtacctcagtc 6254824  T
Q  323 cttgtaacaatgttg 337  Q
    |||||||||||||||    
T  6254825 cttgtaacaatgttg 6254839  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 1751666 - 1751694
Alignment:
Q  1 gacacttaaaaaggaacggagggagtata 29  Q
    |||||||||||||||||||||||||||||    
T  1751666 gacacttaaaaaggaacggagggagtata 1751694  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 3849071 - 3849043
Alignment:
Q  1 gacacttaaaaaggaacggagggagtata 29  Q
    |||||||||||||||||||||||||||||    
T  3849071 gacacttaaaaaggaacggagggagtata 3849043  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 21527476 - 21527504
Alignment:
Q  1 gacacttaaaaaggaacggagggagtata 29  Q
    |||||||||||||||||||||||||||||    
T  21527476 gacacttaaaaaggaacggagggagtata 21527504  T

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Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 226 - 337
Target Start/End: Complemental strand, 54418825 - 54418714
Alignment:
Q  226 attacttcttcattcagaaattgacctgtcactatatagtatcttctagttctacctaatgtgtctttgtattaaatcatcaatttgtaccttagtcctt 325  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||    
T  54418825 attacttcttcattcagatattgacctgtcactatatagtatcttctagttctacctactgtgtctttgtattcaatcatcaatttgtacctcagtcctt 54418726  T
Q  326 gtaacaatgttg 337  Q
    ||||||||||||    
T  54418725 gtaacaatgttg 54418714  T

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Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 54419032 - 54418864
Alignment:
Q  26 tatataggaaggattcatatattttctgttctt--attttgttcatcagagcattgaatttcattttttaaaattgtttagcaccgtaaagagtctttgg 123  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||  | |||||| ||||     
T  54419032 tatataggaaggattcatatattttctgttcttgtattttgttcatcagagcattgaatttcattttttgaaattgtttagcactatgaagagt-tttgt 54418934  T
Q  124 acataattagcatattaagaagtatcttaattacttcttagtgatattgaaattattactttacctaataaaaatt 199  Q
    ||||||||||   ||| ||||||||||||||||||||| | ||||||||||   ||| ||||||||||||||||||    
T  54418933 acataattag---attgagaagtatcttaattacttctcactgatattgaa---attgctttacctaataaaaatt 54418864  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 668204 - 668234
Alignment:
Q  1 gacacttaaaaaggaacggagggagtatata 31  Q
    |||||||||||||||||||||||||||||||    
T  668204 gacacttaaaaaggaacggagggagtatata 668234  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 21342355 - 21342385
Alignment:
Q  2 acacttaaaaaggaacggagggagtatatag 32  Q
    |||||||||||||||||||||||||||||||    
T  21342355 acacttaaaaaggaacggagggagtatatag 21342385  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 37209556 - 37209526
Alignment:
Q  1 gacacttaaaaaggaacggagggagtatata 31  Q
    |||||||||||||||||||||||||||||||    
T  37209556 gacacttaaaaaggaacggagggagtatata 37209526  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 13629428 - 13629456
Alignment:
Q  1 gacacttaaaaaggaacggagggagtata 29  Q
    |||||||||||||||||||||||||||||    
T  13629428 gacacttaaaaaggaacggagggagtata 13629456  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 50623423 - 50623395
Alignment:
Q  1 gacacttaaaaaggaacggagggagtata 29  Q
    |||||||||||||||||||||||||||||    
T  50623423 gacacttaaaaaggaacggagggagtata 50623395  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 177
Target Start/End: Complemental strand, 5993084 - 5992996
Alignment:
Q  89 ttttaaaattgtttagcaccgtaaagagtctttggacataattagcatattaagaagtatcttaattacttcttagtgatattgaaatt 177  Q
    |||| ||||||||||||||  | |||||||||||||| | ||||||||| | | |||||||| |||||||||||| ||||||| |||||    
T  5993084 tttttaaattgtttagcactatcaagagtctttggacgtcattagcataatgacaagtatctcaattacttcttactgatattcaaatt 5992996  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 5992934 - 5992894
Alignment:
Q  233 cttcattcagaaattgacctgtcactatatagtatcttcta 273  Q
    ||||||||||| ||| ||||||||||||||| |||||||||    
T  5992934 cttcattcagatattcacctgtcactatatactatcttcta 5992894  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 34399208 - 34399180
Alignment:
Q  1 gacacttaaaaaggaacggagggagtata 29  Q
    |||||||||||||||||||||||||||||    
T  34399208 gacacttaaaaaggaacggagggagtata 34399180  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 1795348 - 1795381
Alignment:
Q  1 gacacttaaaaaggaacggagggagtatatagga 34  Q
    ||||||||||||||||||||||||||||||||||    
T  1795348 gacacttaaaaaggaacggagggagtatatagga 1795381  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 39073032 - 39073002
Alignment:
Q  1 gacacttaaaaaggaacggagggagtatata 31  Q
    |||||||||||||||||||||||||||||||    
T  39073032 gacacttaaaaaggaacggagggagtatata 39073002  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 38503031 - 38503060
Alignment:
Q  1 gacacttaaaaaggaacggagggagtatat 30  Q
    ||||||||||||||||||||||||||||||    
T  38503031 gacacttaaaaaggaacggagggagtatat 38503060  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 42394359 - 42394388
Alignment:
Q  1 gacacttaaaaaggaacggagggagtatat 30  Q
    ||||||||||||||||||||||||||||||    
T  42394359 gacacttaaaaaggaacggagggagtatat 42394388  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 4985405 - 4985433
Alignment:
Q  1 gacacttaaaaaggaacggagggagtata 29  Q
    |||||||||||||||||||||||||||||    
T  4985405 gacacttaaaaaggaacggagggagtata 4985433  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 38297848 - 38297876
Alignment:
Q  1 gacacttaaaaaggaacggagggagtata 29  Q
    |||||||||||||||||||||||||||||    
T  38297848 gacacttaaaaaggaacggagggagtata 38297876  T

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Target: scaffold0018 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 184362 - 184392
Alignment:
Q  1 gacacttaaaaaggaacggagggagtatata 31  Q
    |||||||||||||||||||||||||||||||    
T  184362 gacacttaaaaaggaacggagggagtatata 184392  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 25291082 - 25291112
Alignment:
Q  1 gacacttaaaaaggaacggagggagtatata 31  Q
    |||||||||||||||||||||||||||||||    
T  25291082 gacacttaaaaaggaacggagggagtatata 25291112  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 35112435 - 35112405
Alignment:
Q  1 gacacttaaaaaggaacggagggagtatata 31  Q
    |||||||||||||||||||||||||||||||    
T  35112435 gacacttaaaaaggaacggagggagtatata 35112405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 44480379 - 44480409
Alignment:
Q  1 gacacttaaaaaggaacggagggagtatata 31  Q
    |||||||||||||||||||||||||||||||    
T  44480379 gacacttaaaaaggaacggagggagtatata 44480409  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 39617473 - 39617445
Alignment:
Q  1 gacacttaaaaaggaacggagggagtata 29  Q
    |||||||||||||||||||||||||||||    
T  39617473 gacacttaaaaaggaacggagggagtata 39617445  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 41675423 - 41675451
Alignment:
Q  1 gacacttaaaaaggaacggagggagtata 29  Q
    |||||||||||||||||||||||||||||    
T  41675423 gacacttaaaaaggaacggagggagtata 41675451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 25842083 - 25842113
Alignment:
Q  1 gacacttaaaaaggaacggagggagtatata 31  Q
    |||||||||||||||||||||||||||||||    
T  25842083 gacacttaaaaaggaacggagggagtatata 25842113  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 36371070 - 36371100
Alignment:
Q  1 gacacttaaaaaggaacggagggagtatata 31  Q
    |||||||||||||||||||||||||||||||    
T  36371070 gacacttaaaaaggaacggagggagtatata 36371100  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 15646437 - 15646466
Alignment:
Q  1 gacacttaaaaaggaacggagggagtatat 30  Q
    ||||||||||||||||||||||||||||||    
T  15646437 gacacttaaaaaggaacggagggagtatat 15646466  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 41425635 - 41425606
Alignment:
Q  1 gacacttaaaaaggaacggagggagtatat 30  Q
    ||||||||||||||||||||||||||||||    
T  41425635 gacacttaaaaaggaacggagggagtatat 41425606  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 7259311 - 7259283
Alignment:
Q  1 gacacttaaaaaggaacggagggagtata 29  Q
    |||||||||||||||||||||||||||||    
T  7259311 gacacttaaaaaggaacggagggagtata 7259283  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 31588970 - 31589000
Alignment:
Q  1 gacacttaaaaaggaacggagggagtatata 31  Q
    |||||||||||||||||||||||||||||||    
T  31588970 gacacttaaaaaggaacggagggagtatata 31589000  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 1677222 - 1677194
Alignment:
Q  1 gacacttaaaaaggaacggagggagtata 29  Q
    |||||||||||||||||||||||||||||    
T  1677222 gacacttaaaaaggaacggagggagtata 1677194  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 35531526 - 35531554
Alignment:
Q  1 gacacttaaaaaggaacggagggagtata 29  Q
    |||||||||||||||||||||||||||||    
T  35531526 gacacttaaaaaggaacggagggagtata 35531554  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 48508139 - 48508111
Alignment:
Q  1 gacacttaaaaaggaacggagggagtata 29  Q
    |||||||||||||||||||||||||||||    
T  48508139 gacacttaaaaaggaacggagggagtata 48508111  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 3443876 - 3443905
Alignment:
Q  1 gacacttaaaaaggaacggagggagtatat 30  Q
    ||||||||||||||||||||||||||||||    
T  3443876 gacacttaaaaaggaacggagggagtatat 3443905  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 23429915 - 23429886
Alignment:
Q  1 gacacttaaaaaggaacggagggagtatat 30  Q
    ||||||||||||||||||||||||||||||    
T  23429915 gacacttaaaaaggaacggagggagtatat 23429886  T

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