View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11294_low_23 (Length: 347)
Name: NF11294_low_23
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11294_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 31088780 - 31089093
Alignment:
| Q |
19 |
gaaattagctccttctcttttaatagtgcaaatcactaaaattgtaagagaagtttatgaagaaggtatttggattttaacagtttcaatgagcgtttat |
118 |
Q |
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| T |
31088780 |
gaaattagctccttctcttttaatactgcaaatcactaaaattgtaagagaagtttatgaagaaggtatttggattttaacagtttcaatgagtgtttat |
31088879 |
T |
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| Q |
119 |
gcaggataaatgtttattacatgtttttctaatcgaggaaagaacgaagggtaactccttatcataaactctatcagttgcttctatgggggagtttacg |
218 |
Q |
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| T |
31088880 |
gcaggataaatgtttattacatgtttttctaatcgaggaaagaacgaagggtaactccttatcataaactctatcagttgcttctataggggagtttacg |
31088979 |
T |
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| Q |
219 |
gaagatatgttcaaggttttaaataaaagtcgccactgcaacatgacagtttttatgttgccaaaaccatgatgcagtcacgattgagcacacatttaac |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31088980 |
gaagatatgttcaaggttttaaataaaagtcgccactgcaacatgacagtttttatgttgccaaaaccacgatgcagtcacgattgagcacacatttaac |
31089079 |
T |
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| Q |
319 |
tgcaattctctgct |
332 |
Q |
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|||||||||||||| |
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| T |
31089080 |
tgcaattctctgct |
31089093 |
T |
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